2K1L

NMR structures of dimeric transmembrane domain of the receptor tyrosine kinase EphA1 in lipid bicelles at pH 6.3


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC3 mM 15N, 13C EphA1_TM 15N, 96 mM 2H DHPC, 24 mM 2H DMPC, 1.5 mM NaN3, 1 mM EDTA, 10 mM phosphate buffer95% H2O/5% D2O6.3313
22D 1H-13C HSQC3 mM 15N, 13C EphA1_TM 15N, 13C, 96 mM 2H DHPC, 24 mM 2H DMPC, 1.5 mM NaN3, 1 mM EDTA, 10 mM phosphate buffer100% D2O6.3313
33D 1H-15N NOESY3 mM 15N, 13C EphA1_TM 15N, 96 mM 2H DHPC, 24 mM 2H DMPC, 1.5 mM NaN3, 1 mM EDTA, 10 mM phosphate buffer95% H2O/5% D2O6.3313
43D 1H-13C NOESY3 mM 15N, 13C EphA1_TM 15N, 13C, 96 mM 2H DHPC, 24 mM 2H DMPC, 1.5 mM NaN3, 1 mM EDTA, 10 mM phosphate buffer100% D2O6.3313
513C F1-filtered/F3-edited-NOESY1.5 mM 15N, 13C EphA1_TM 15N,13C, 96 mM 2H DHPC, 24 mM 2H DMPC, 1.5 mM NaN3, 1 mM EDTA, 10 mM phosphate buffer, 1.5 mM EphA1_TM100% D2O6.3313
615N-T13 mM 15N, 13C EphA1_TM 15N, 96 mM 2H DHPC, 24 mM 2H DMPC, 1.5 mM NaN3, 1 mM EDTA, 10 mM phosphate buffer95% H2O/5% D2O6.3313
715N-T23 mM 15N, 13C EphA1_TM 15N, 96 mM 2H DHPC, 24 mM 2H DMPC, 1.5 mM NaN3, 1 mM EDTA, 10 mM phosphate buffer95% H2O/5% D2O6.3313
815N-NOE3 mM 15N, 13C EphA1_TM 15N, 96 mM 2H DHPC, 24 mM 2H DMPC, 1.5 mM NaN3, 1 mM EDTA, 10 mM phosphate buffer95% H2O/5% D2O6.3313
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianUNITY600
NMR Refinement
MethodDetailsSoftware
simulated annealingNMRPipe
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number12
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2chemical shift assignmentCARA1.5.5, 1.8Keller and Wuthrich
3structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich
4refinementCYANA2.1Guntert, Mumenthaler and Wuthrich