2HAC

Structure of Zeta-Zeta Transmembrane Dimer


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1gradient-enhanced HNCA0.5-1.0 mM disulfide crosslinked zeta-zeta dimer U-15N,U-13C,85%-2H. Sodium dodecyl sulfate (40 mM) and dodecyl phosphocholine (200 mM), 95% H2O, 5% D2O.95% H2O/5% D2O20 mM sodium phosphate buffer7.0ambient303
23D_15N-separated_NOESY0.5-1.0 mM disulfide crosslinked zeta-zeta dimer U-15N,U-13C. Sodium dodecyl sulfate (40 mM) and dodecyl phosphocholine (200 mM), 95% H2O, 5% D2O.95% H2O/5% D2O20 mM sodium phosphate buffer7.0ambient303
33D_15N-separated_NOESY0.5-1.0 mM disulfide crosslinked zeta-zeta dimer U-15N,U-13C. Sodium dodecyl sulfate (40 mM) and dodecyl phosphocholine (200 mM), 95% H2O, 5% D2O.95% H2O/5% D2O20 mM sodium phosphate buffer7.0ambient303
43D_13C-separated_NOESY0.5-1.0 mM disulfide crosslinked zeta-zeta dimer U-15N,U-13C. Sodium dodecyl sulfate (40 mM) and dodecyl phosphocholine (200 mM), 95% H2O, 5% D2O.95% H2O/5% D2O20 mM sodium phosphate buffer7.0ambient303
53D_15N-separated_NOESY0.5-1.0 mM disulfide crosslinked zeta-zeta dimer, mixed-label. One monomer: U-15N,U-2H. Other monomer: natural abundance isotopes. Sodium dodecyl sulfate (40 mM) and dodecyl phosphocholine (200 mM), 95% H2O, 5% D2O.95% H2O/5% D2O20 mM sodium phosphate buffer7.0ambient303
6standard HSQC and trosy-HSQC for D(NH) couplings; 2D (CA)CONH quantitative JCH experiment for D(CaHa) couplings0.5-1.0 mM disulfide crosslinked zeta-zeta dimer U-15N,U-13C. Sodium dodecyl sulfate (40 mM) and dodecyl phosphocholine (200 mM), 95% H2O, 5% D2O. 5% polyacrylamide gel.95% H2O/5% D2O20 mM sodium phosphate buffer7.0ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealing426 intramolecular NOE restraints, 46 intermolecular NOE restraints, 42 dihedral angle restraints, 70 residual dipolar coupling restraints.NMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number30
Conformers Submitted Total Number15
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe1.0Frank Delaglio
2data analysisCARA1.5Rochus Keller
3refinementXPLOR-NIH2.11Charles Schwieters