6TWV

Crystal structure of the haemagglutinin mutant (Gln226Leu) from an H10N7 seal influenza virus isolated in Germany with human receptor analogue, 6'SLN

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth C]	d6twvc_	All beta proteins	Viral protein domain	Viral protein domain	automated matches	automated matches	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
C [auth E]	d6twve1	All beta proteins	Viral protein domain	Viral protein domain	automated matches	automated matches	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
C [auth E]	d6twve2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
E [auth K]	d6twvk1	All beta proteins	Viral protein domain	Viral protein domain	automated matches	automated matches	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
E [auth K]	d6twvk2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
G [auth A]	d6twva1	All beta proteins	Viral protein domain	Viral protein domain	automated matches	automated matches	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
G [auth A]	d6twva2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
I [auth G]	d6twvg_	All beta proteins	Viral protein domain	Viral protein domain	automated matches	automated matches	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
K [auth I]	d6twvi1	All beta proteins	Viral protein domain	Viral protein domain	automated matches	automated matches	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
K [auth I]	d6twvi2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
B [auth D]	d6twvd_	Coiled coil proteins	Stalk segment of viral fusion proteins	Influenza hemagglutinin (stalk)	Influenza hemagglutinin (stalk)	Influenza hemagglutinin (stalk)	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
D [auth F]	d6twvf_	Coiled coil proteins	Stalk segment of viral fusion proteins	Influenza hemagglutinin (stalk)	Influenza hemagglutinin (stalk)	Influenza hemagglutinin (stalk)	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
F [auth L]	d6twvl_	Coiled coil proteins	Stalk segment of viral fusion proteins	Influenza hemagglutinin (stalk)	Influenza hemagglutinin (stalk)	Influenza hemagglutinin (stalk)	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
H [auth B]	d6twvb_	Coiled coil proteins	Stalk segment of viral fusion proteins	Influenza hemagglutinin (stalk)	Influenza hemagglutinin (stalk)	Influenza hemagglutinin (stalk)	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
J [auth H]	d6twvh_	Coiled coil proteins	Stalk segment of viral fusion proteins	Influenza hemagglutinin (stalk)	Influenza hemagglutinin (stalk)	Influenza hemagglutinin (stalk)	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)
L [auth J]	d6twvj_	Coiled coil proteins	Stalk segment of viral fusion proteins	Influenza hemagglutinin (stalk)	Influenza hemagglutinin (stalk)	Influenza hemagglutinin (stalk)	(Influenza A virus (A/harbour seal/Germany/1/2014(H10N7)) ) [TaxId: 1572188 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth C]	SCOP2B Superfamily	Influenza hemagglutinin domain-like	8101189	3001342	SCOP2B (2022-06-29)
C [auth E]	SCOP2B Superfamily	Influenza hemagglutinin domain-like	8101189	3001342	SCOP2B (2022-06-29)
E [auth K]	SCOP2B Superfamily	Influenza hemagglutinin domain-like	8101189	3001342	SCOP2B (2022-06-29)
G [auth A]	SCOP2B Superfamily	Influenza hemagglutinin domain-like	8101189	3001342	SCOP2B (2022-06-29)
I [auth G]	SCOP2B Superfamily	Influenza hemagglutinin domain-like	8101189	3001342	SCOP2B (2022-06-29)
K [auth I]	SCOP2B Superfamily	Influenza hemagglutinin domain-like	8101189	3001342	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]	PF00509	e6twvC1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00509	ECOD (1.6)
C [auth E]	PF00509	e6twvE1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00509	ECOD (1.6)
E [auth K]	PF00509	e6twvK1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00509	ECOD (1.6)
G [auth A]	PF00509	e6twvA1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00509	ECOD (1.6)
I [auth G]	PF00509	e6twvG1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00509	ECOD (1.6)
K [auth I]	PF00509	e6twvI1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: PF00509	ECOD (1.6)
B [auth D]	PF00509	e6twvD1	A: alpha bundles	X: Hemagglutinin HA2 chain (From Topology)	H: Hemagglutinin HA2 chain (From Topology)	T: Hemagglutinin HA2 chain	F: PF00509	ECOD (1.6)
D [auth F]	PF00509	e6twvF1	A: alpha bundles	X: Hemagglutinin HA2 chain (From Topology)	H: Hemagglutinin HA2 chain (From Topology)	T: Hemagglutinin HA2 chain	F: PF00509	ECOD (1.6)
F [auth L]	PF00509	e6twvL1	A: alpha bundles	X: Hemagglutinin HA2 chain (From Topology)	H: Hemagglutinin HA2 chain (From Topology)	T: Hemagglutinin HA2 chain	F: PF00509	ECOD (1.6)
H [auth B]	PF00509	e6twvB1	A: alpha bundles	X: Hemagglutinin HA2 chain (From Topology)	H: Hemagglutinin HA2 chain (From Topology)	T: Hemagglutinin HA2 chain	F: PF00509	ECOD (1.6)
J [auth H]	PF00509	e6twvH1	A: alpha bundles	X: Hemagglutinin HA2 chain (From Topology)	H: Hemagglutinin HA2 chain (From Topology)	T: Hemagglutinin HA2 chain	F: PF00509	ECOD (1.6)
L [auth J]	PF00509	e6twvJ1	A: alpha bundles	X: Hemagglutinin HA2 chain (From Topology)	H: Hemagglutinin HA2 chain (From Topology)	T: Hemagglutinin HA2 chain	F: PF00509	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], C [auth E], E [auth K], G [auth A], I [auth G], A [auth C], C [auth E], E [auth K], G [auth A], I [auth G], K [auth I]	PF00509	Haemagglutinin (Hemagglutinin)	Haemagglutinin	-	Family
B [auth D], D [auth F], F [auth L], H [auth B], J [auth H], B [auth D], D [auth F], F [auth L], H [auth B], J [auth H], L [auth J]	PF00509	Haemagglutinin (Hemagglutinin)	Haemagglutinin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], C [auth E], E [auth K], G [auth A], I [auth G], A [auth C], C [auth E], E [auth K], G [auth A], I [auth G], K [auth I]	Hemagglutinin HA1	host cell surface binding binding host cell surface receptor binding	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell transport of virus membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane cellular component organization or biogenesis virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	virion component viral membrane viral envelope host cell plasma membrane host cellular component host cell part host cell membrane cellular anatomical entity cell periphery apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane
B [auth D], D [auth F], F [auth L], H [auth B], J [auth H], B [auth D], D [auth F], F [auth L], H [auth B], J [auth H], L [auth J]	Hemagglutinin HA2	host cell surface binding binding host cell surface receptor binding	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell transport of virus membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane cellular component organization or biogenesis virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	virion component viral membrane viral envelope host cell plasma membrane host cellular component host cell part host cell membrane cellular anatomical entity cell periphery apical part of cell membrane plasma membrane plasma membrane region apical plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], C [auth E], E [auth K], G [auth A], I [auth G], A [auth C], C [auth E], E [auth K], G [auth A], I [auth G], K [auth I]	IPR001364	Haemagglutinin, influenzavirus A/B	Family
A [auth C], C [auth E], E [auth K], G [auth A], I [auth G], A [auth C], C [auth E], E [auth K], G [auth A], I [auth G], K [auth I]	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily
A [auth C], C [auth E], E [auth K], G [auth A], I [auth G], A [auth C], C [auth E], E [auth K], G [auth A], I [auth G], K [auth I]	IPR000149	Haemagglutinin, influenzavirus A	Family
A [auth C], C [auth E], E [auth K], G [auth A], I [auth G], A [auth C], C [auth E], E [auth K], G [auth A], I [auth G], K [auth I]	IPR013828	Haemagglutinin, HA1 chain, alpha/beta domain superfamily	Homologous Superfamily
B [auth D], D [auth F], F [auth L], H [auth B], J [auth H], B [auth D], D [auth F], F [auth L], H [auth B], J [auth H], L [auth J]	IPR001364	Haemagglutinin, influenzavirus A/B	Family
B [auth D], D [auth F], F [auth L], H [auth B], J [auth H], B [auth D], D [auth F], F [auth L], H [auth B], J [auth H], L [auth J]	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily
B [auth D], D [auth F], F [auth L], H [auth B], J [auth H], B [auth D], D [auth F], F [auth L], H [auth B], J [auth H], L [auth J]	IPR000149	Haemagglutinin, influenzavirus A	Family
B [auth D], D [auth F], F [auth L], H [auth B], J [auth H], B [auth D], D [auth F], F [auth L], H [auth B], J [auth H], L [auth J]	IPR013828	Haemagglutinin, HA1 chain, alpha/beta domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.