6SPF

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyTranslational proteins8093984 3000811 SCOP2B (2022-06-29)
ESCOP2 FamilyRibosomal protein L48094756 4003628 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyRibosomal protein L48094757 3001146 SCOP2 (2022-06-29)
FSCOP2B SuperfamilyRL5-like8094040 3001709 SCOP2B (2022-06-29)
JSCOP2 FamilyRibosomal protein L138094618 4003623 SCOP2 (2022-06-29)
JSCOP2 SuperfamilyRibosomal protein L138094619 3001134 SCOP2 (2022-06-29)
KSCOP2 FamilyRibosomal protein L148094458 4001826 SCOP2 (2022-06-29)
KSCOP2 Superfamily50S Ribosomal protein L14-like8094459 3000433 SCOP2 (2022-06-29)
LSCOP2 FamilyRibosomal proteins L15p and L18e8094824 4003555 SCOP2 (2022-06-29)
LSCOP2 SuperfamilyRibosomal proteins L15p and L18e8094825 3001045 SCOP2 (2022-06-29)
MSCOP2 FamilyRibosomal protein L16p8094558 4003717 SCOP2 (2022-06-29)
MSCOP2 SuperfamilyRibosomal protein L16p/L10e8094559 3000884 SCOP2 (2022-06-29)
NSCOP2 FamilyProkaryotic ribosomal protein L178094542 4003526 SCOP2 (2022-06-29)
NSCOP2 SuperfamilyProkaryotic ribosomal protein L178094543 3000995 SCOP2 (2022-06-29)
OSCOP2 FamilyRibosomal protein L18p and S118097667 4000555 SCOP2 (2022-06-29)
OSCOP2 SuperfamilyTranslational machinery components8097668 3000571 SCOP2 (2022-06-29)
PSCOP2 FamilyRibosomal protein L198094660 4001761 SCOP2 (2022-06-29)
PSCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain8094661 3000334 SCOP2 (2022-06-29)
QSCOP2B SuperfamilyRibosomal protein L208094481 3000563 SCOP2B (2022-06-29)
RSCOP2B Superfamilyl21p-like8094078 3002005 SCOP2B (2022-06-29)
SSCOP2 FamilyRibosomal protein L228094714 4001212 SCOP2 (2022-06-29)
SSCOP2 SuperfamilyRibosomal protein L228094715 3001078 SCOP2 (2022-06-29)
TSCOP2 FamilyL23p8095262 4000943 SCOP2 (2022-06-29)
TSCOP2 SuperfamilyRibosomal proteins S24e L23 and L15e8095263 3000210 SCOP2 (2022-06-29)
USCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8094791 3000334 SCOP2B (2022-06-29)
VSCOP2 FamilyRibosomal protein L25-like8096075 4002376 SCOP2 (2022-06-29)
VSCOP2 SuperfamilyRibosomal protein L25-like8096076 3001161 SCOP2 (2022-06-29)
WSCOP2 FamilyRibosomal L27 protein8094658 4001900 SCOP2 (2022-06-29)
WSCOP2 SuperfamilyRibosomal L27 protein-like8094659 3000539 SCOP2 (2022-06-29)
XSCOP2B SuperfamilyL28p-like8093920 3001966 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyRibosomal protein L30p/L7e8095147 3001378 SCOP2B (2022-06-29)
BA [auth 2]SCOP2 FamilyRibosomal protein L32p8094059 4000508 SCOP2 (2022-06-29)
BA [auth 2]SCOP2 SuperfamilyZn-binding ribosomal proteins8094060 3001320 SCOP2 (2022-06-29)
CA [auth 3]SCOP2B SuperfamilyZn-binding ribosomal proteins8094409 3001320 SCOP2B (2022-06-29)
EA [auth 5]SCOP2 FamilyRibosomal protein L35p8094942 4003406 SCOP2 (2022-06-29)
EA [auth 5]SCOP2 SuperfamilyL35p-like8094943 3000790 SCOP2 (2022-06-29)
FA [auth 6]SCOP2B SuperfamilyRibosomal protein L368093874 3001346 SCOP2B (2022-06-29)
HA [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8094601 3001397 SCOP2B (2022-06-29)
JA [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif8096080 3001473 SCOP2B (2022-06-29)
LA [auth f]SCOP2B SuperfamilyRibosomal protein S68096066 3001323 SCOP2B (2022-06-29)
MA [auth g]SCOP2B SuperfamilyRibosomal protein S78095087 3000799 SCOP2B (2022-06-29)
NA [auth h]SCOP2 FamilyRibosomal protein S88095514 4002027 SCOP2 (2022-06-29)
NA [auth h]SCOP2 SuperfamilyRibosomal protein S88095515 3000709 SCOP2 (2022-06-29)
OA [auth i]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8095363 3000100 SCOP2B (2022-06-29)
PA [auth j]SCOP2B SuperfamilyRibosomal protein S108095145 3001336 SCOP2B (2022-06-29)
QA [auth k]SCOP2B SuperfamilyTranslational machinery components8093914 3000571 SCOP2B (2022-06-29)
RA [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins8094599 3000135 SCOP2B (2022-06-29)
SA [auth m]SCOP2B SuperfamilyS13-like H2TH domain8094104 3000053 SCOP2B (2022-06-29)
TA [auth n]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8094046 3000068 SCOP2B (2022-06-29)
UA [auth o]SCOP2 Family30S Ribosomal protein S15 / 40S Ribosomal protein S138094029 4000767 SCOP2 (2022-06-29)
UA [auth o]SCOP2 SuperfamilyS15/NS1 RNA-binding domain8094030 3001284 SCOP2 (2022-06-29)
VA [auth p]SCOP2B SuperfamilyRibosomal protein S168094164 3000680 SCOP2B (2022-06-29)
WA [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins8094102 3000135 SCOP2B (2022-06-29)
YA [auth s]SCOP2B SuperfamilyRibosomal protein S198094036 3000686 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CPF00181e6spfC2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
CPF03947e6spfC1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
DPF00297e6spfD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
EPF00573e6spfE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
FPF00281,PF00673e6spfF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
GPF00347e6spfG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
HPF01281e6spfH1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
IPF00298e6spfI1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
IPF03946e6spfI2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
JPF00572e6spfJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
KPF00238e6spfK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
LPF00828e6spfL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
MPF00252e6spfM1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
NPF01196e6spfN1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
OPF00861e6spfO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
PPF01245e6spfP1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
QPF00453e6spfQ1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
RPF00829e6spfR1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
SPF00237e6spfS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
TPF00276e6spfT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
UPF00467,PF17136e6spfU1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
VPF01386e6spfV2 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
VPF14693e6spfV1 A: a+b complex topologyX: Ribosomal protein TL5/L25 C-terminal domain-likeH: Ribosomal protein TL5/L25 C-terminal domain-related (From Topology)T: Ribosomal protein TL5/L25 C-terminal domain-relatedF: PF14693ECOD (1.6)
WPF01016e6spfW1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
XPF00830e6spfX1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
YPF00831e6spfY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
ZPF00327e6spfZ1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
AA [auth 1]PF01197e6spf11 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF01197ECOD (1.6)
BA [auth 2]PF01783e6spf21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
CA [auth 3]PF00471e6spf31 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
DA [auth 4]PF00468e6spf41 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
EA [auth 5]PF01632e6spf51 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
FA [auth 6]PF00444e6spf61 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
HA [auth b]PF00318e6spfb1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
IA [auth c]PF00189e6spfc1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
IA [auth c]PF07650e6spfc2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
JA [auth d]PF00163,PF01479e6spfd1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
KA [auth e]PF03719e6spfe1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
KA [auth e]PF00333e6spfe2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
LA [auth f]PF01250e6spff1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
MA [auth g]PF00177e6spfg1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
NA [auth h]PF00410e6spfh1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
NA [auth h]PF00410e6spfh2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
OA [auth i]PF00380e6spfi1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
PA [auth j]PF00338e6spfj1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
QA [auth k]PF00411e6spfk1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
RA [auth l]PF00164e6spfl1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
SA [auth m]PF00416e6spfm1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
TA [auth n]PF00253e6spfn1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
UA [auth o]PF00312e6spfo1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
VA [auth p]PF00886e6spfp1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
WA [auth q]PF00366e6spfq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
XA [auth r]PF01084e6spfr1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
YA [auth s]PF00203e6spfs1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
ZA [auth t]PF01649e6spft1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
AB [auth u]F_UNCLASSIFIEDe6spfu1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: F_UNCLASSIFIEDECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
PF00467KOW motif (KOW)KOW motif- Family
PF14693Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C)Ribosomal protein TL5, C-terminal domainThis family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ...This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown.
Domain
PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
AA [auth 1]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
BA [auth 2]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
CA [auth 3]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
DA [auth 4]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
EA [auth 5]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
FA [auth 6]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
HA [auth b]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
IA [auth c]PF07650KH domain (KH_2)KH domain- Domain
IA [auth c]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
JA [auth d]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
JA [auth d]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
KA [auth e]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
KA [auth e]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
LA [auth f]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
MA [auth g]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
NA [auth h]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
OA [auth i]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PA [auth j]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
QA [auth k]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
RA [auth l]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
SA [auth m]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
TA [auth n]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
UA [auth o]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
VA [auth p]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
WA [auth q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
XA [auth r]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
YA [auth s]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
ZA [auth t]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
AB [auth u]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA---
5S rRNA---
50S ribosomal protein L2
50S ribosomal protein L3
50S ribosomal protein L4
50S ribosomal protein L5
50S ribosomal protein L6
50S ribosomal protein L9
50S ribosomal protein L11
50S ribosomal protein L13
50S ribosomal protein L14
50S ribosomal protein L15
50S ribosomal protein L16
50S ribosomal protein L17
50S ribosomal protein L18
50S ribosomal protein L19
50S ribosomal protein L20
50S ribosomal protein L21
50S ribosomal protein L22---
50S ribosomal protein L23
50S ribosomal protein L24
50S ribosomal protein L25
50S ribosomal protein L27
50S ribosomal protein L28
Ribosomal protein uL29---
50S ribosomal protein L30
AA [auth 1]50S ribosomal protein L31
BA [auth 2]50S ribosomal protein L32
CA [auth 3]50S ribosomal protein L33
DA [auth 4]50S ribosomal protein L34
EA [auth 5]50S ribosomal protein L35
FA [auth 6]50S ribosomal protein L36
GA [auth a]16S rRNA---
HA [auth b]30S ribosomal protein S2
IA [auth c]30S ribosomal protein S3
JA [auth d]30S ribosomal protein S4
KA [auth e]30S ribosomal protein S5
LA [auth f]30S ribosomal protein S6
MA [auth g]30S ribosomal protein S7
NA [auth h]30S ribosomal protein S8
OA [auth i]30S ribosomal protein S9
PA [auth j]30S ribosomal protein S10
QA [auth k]30S ribosomal protein S11
RA [auth l]30S ribosomal protein S12
SA [auth m]30S ribosomal protein S13
TA [auth n]30S ribosomal protein S14
UA [auth o]30S ribosomal protein S15
VA [auth p]30S ribosomal protein S16
WA [auth q]30S ribosomal protein S17
XA [auth r]30S ribosomal protein S18
YA [auth s]30S ribosomal protein S19
ZA [auth t]30S ribosomal protein S20
AB [auth u]30S ribosomal protein S21

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
IPR002132Large ribosomal subunit protein uL5Family
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR000702Large ribosomal subunit protein uL6-likeFamily
IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
IPR000244Large ribosomal subunit protein bL9Family
IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
IPR000911Ribosomal protein uL11Family
IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
IPR005822Large ribosomal subunit protein uL13Family
IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
IPR000218Large ribosomal subunit protein uL14Family
IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
IPR021131Large ribosomal subunit protein uL15/eL18Domain
IPR030878Large ribosomal subunit protein uL15Family
IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
IPR016180Large ribosomal subunit protein uL16 domainDomain
IPR047873Large ribosomal subunit protein uL16Family
IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
IPR000456Large ribosomal subunit protein bL17Family
IPR005484Large ribosomal subunit protein uL18Family
IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
IPR001857Large ribosomal subunit protein bL19Family
IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
IPR005813Large ribosomal subunit protein bL20Family
IPR028909Large ribosomal subunit protein bL21-likeFamily
IPR001787Large ribosomal subunit protein bL21Family
IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
IPR013025Large ribosomal subunit protein uL23-likeFamily
IPR003256Large ribosomal subunit protein uL24Family
IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR005824KOWDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
IPR001021Ribosomal protein bL25, long-formFamily
IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
IPR037121Large ribosomal subunit protein bL25, C-terminalHomologous Superfamily
IPR020057Large ribosomal subunit protein bL25, beta domainDomain
IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
IPR001684Large ribosomal subunit protein bL27Family
IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
IPR026569Large ribosomal subunit protein bL28Family
IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
AA [auth 1]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
AA [auth 1]IPR027491Large ribosomal subunit protein bL31 type AFamily
AA [auth 1]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
AA [auth 1]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
BA [auth 2]IPR002677Large ribosomal subunit protein bL32Family
BA [auth 2]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BA [auth 2]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
CA [auth 3]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
CA [auth 3]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
CA [auth 3]IPR001705Large ribosomal subunit protein bL33Family
CA [auth 3]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
DA [auth 4]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
DA [auth 4]IPR000271Large ribosomal subunit protein bL34Family
EA [auth 5]IPR021137Large ribosomal subunit protein bL35-likeFamily
EA [auth 5]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
EA [auth 5]IPR001706Large ribosomal subunit protein bL35Family
EA [auth 5]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
FA [auth 6]IPR000473Large ribosomal subunit protein bL36Family
FA [auth 6]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
HA [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
HA [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
HA [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
HA [auth b]IPR001865Small ribosomal subunit protein uS2Family
IA [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
IA [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
IA [auth c]IPR004087K Homology domainDomain
IA [auth c]IPR004044K Homology domain, type 2Domain
IA [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
IA [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
IA [auth c]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
IA [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
JA [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
JA [auth d]IPR002942RNA-binding S4 domainDomain
JA [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
JA [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
JA [auth d]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
JA [auth d]IPR022801Small ribosomal subunit protein uS4Family
KA [auth e]IPR000851Small ribosomal subunit protein uS5Family
KA [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
KA [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
KA [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
KA [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
KA [auth e]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
KA [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
LA [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
LA [auth f]IPR000529Small ribosomal subunit protein bS6Family
LA [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
LA [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
LA [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
MA [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
MA [auth g]IPR000235Small ribosomal subunit protein uS7Family
MA [auth g]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
MA [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
MA [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
NA [auth h]IPR000630Small ribosomal subunit protein uS8Family
NA [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
NA [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
OA [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
OA [auth i]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
OA [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
OA [auth i]IPR000754Small ribosomal subunit protein uS9Family
OA [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
PA [auth j]IPR001848Small ribosomal subunit protein uS10Family
PA [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
PA [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
PA [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
QA [auth k]IPR001971Small ribosomal subunit protein uS11Family
QA [auth k]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
QA [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
QA [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
RA [auth l]IPR006032Small ribosomal subunit protein uS12Family
RA [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
RA [auth l]IPR005679Ribosomal protein uS12, bacterial-typeFamily
SA [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
SA [auth m]IPR001892Small ribosomal subunit protein uS13Family
SA [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
SA [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
SA [auth m]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
TA [auth n]IPR001209Small ribosomal subunit protein uS14Family
TA [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
TA [auth n]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
UA [auth o]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
UA [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
UA [auth o]IPR000589Small ribosomal subunit protein uS15Family
VA [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
VA [auth p]IPR000307Small ribosomal subunit protein bS16Family
WA [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
WA [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
WA [auth q]IPR000266Small ribosomal subunit protein uS17Family
XA [auth r]IPR001648Small ribosomal subunit protein bS18Family
XA [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
XA [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
YA [auth s]IPR002222Small ribosomal subunit protein uS19Family
YA [auth s]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
YA [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
YA [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
ZA [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
ZA [auth t]IPR002583Small ribosomal subunit protein bS20Family
AB [auth u]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
AB [auth u]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
AB [auth u]IPR001911Small ribosomal subunit protein bS21Family