6PFY
Membrane Protein Megahertz Crystallography at the European XFEL, Photosystem I at synchrotron to 2.9 A
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034272 | 3000850 | SCOP2B (2022-06-29) |
Y | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034272 | 3000850 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034272 | 3000850 | SCOP2B (2022-06-29) |
HA [auth h] | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8034291 | 3000870 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8034291 | 3000870 | SCOP2B (2022-06-29) |
U | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8034291 | 3000870 | SCOP2B (2022-06-29) |
IA [auth i] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre PsaM | 8034290 | 3000829 | SCOP2B (2022-06-29) |
V | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre PsaM | 8034290 | 3000829 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre PsaM | 8034290 | 3000829 | SCOP2B (2022-06-29) |
X | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8034292 | 3000838 | SCOP2B (2022-06-29) |
JA [auth j] | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8034292 | 3000838 | SCOP2B (2022-06-29) |
W | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8034292 | 3000838 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034274 | 3000850 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034274 | 3000850 | SCOP2B (2022-06-29) |
Z | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8034274 | 3000850 | SCOP2B (2022-06-29) |
AA [auth a] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8034277 | 3000020 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8034277 | 3000020 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8034277 | 3000020 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Photosystem I subunit PsaD | 8034279 | 3000951 | SCOP2B (2022-06-29) |
BA [auth b] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8034279 | 3000951 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | Photosystem I subunit PsaD | 8034279 | 3000951 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Electron transport accessory proteins | 8034282 | 3000325 | SCOP2B (2022-06-29) |
P | SCOP2B Superfamily | Electron transport accessory proteins | 8034282 | 3000325 | SCOP2B (2022-06-29) |
CA [auth c] | SCOP2B Superfamily | Electron transport accessory proteins | 8034282 | 3000325 | SCOP2B (2022-06-29) |
DA [auth d] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre PsaF | 8034284 | 3000813 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Subunit III of photosystem I reaction centre PsaF | 8034284 | 3000813 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | Subunit III of photosystem I reaction centre PsaF | 8034284 | 3000813 | SCOP2B (2022-06-29) |
EA [auth e] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8034286 | 3000819 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8034286 | 3000819 | SCOP2B (2022-06-29) |
R | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8034286 | 3000819 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre PsaJ | 8034287 | 3000824 | SCOP2B (2022-06-29) |
S | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre PsaJ | 8034287 | 3000824 | SCOP2B (2022-06-29) |
FA [auth f] | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre PsaJ | 8034287 | 3000824 | SCOP2B (2022-06-29) |
GA [auth g] | SCOP2B Superfamily | Photosystem I reaction center subunit X PsaK | 8034288 | 3000859 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Photosystem I reaction center subunit X PsaK | 8034288 | 3000859 | SCOP2B (2022-06-29) |
T | SCOP2B Superfamily | Photosystem I reaction center subunit X PsaK | 8034288 | 3000859 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00223 | e6pfyA1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
A | PF00223 | e6pfyA2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
Y | PF00223 | e6pfyY1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
Y | PF00223 | e6pfyY2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
G | PF00223 | e6pfyG1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
G | PF00223 | e6pfyG2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
HA [auth h] | PF02605 | e6pfyh1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
L | PF02605 | e6pfyL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
U | PF02605 | e6pfyU1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
IA [auth i] | PF07465 | e6pfyi1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
V | PF07465 | e6pfyV1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
M | PF07465 | e6pfyM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
X | PF08078 | e6pfyX1 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PF08078 | ECOD (1.6) |
JA [auth j] | PF08078 | e6pfyj1 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PF08078 | ECOD (1.6) |
W | PF08078 | e6pfyW1 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PF08078 | ECOD (1.6) |
B | PF00223 | e6pfyB1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
B | PF00223 | e6pfyB2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
H | PF00223 | e6pfyH2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
H | PF00223 | e6pfyH1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
Z | PF00223 | e6pfyZ1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
Z | PF00223 | e6pfyZ2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
AA [auth a] | PF00037 | e6pfya1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
N | PF00037 | e6pfyN1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
C | PF00037 | e6pfyC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
D | PF02531 | e6pfyD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
BA [auth b] | PF02531 | e6pfyb1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
O | PF02531 | e6pfyO1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
E | PF02427 | e6pfyE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
P | PF02427 | e6pfyP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
CA [auth c] | PF02427 | e6pfyc1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
DA [auth d] | PF02507 | e6pfyd1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PF02507 | ECOD (1.6) |
F | PF02507 | e6pfyF1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PF02507 | ECOD (1.6) |
Q | PF02507 | e6pfyQ1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PF02507 | ECOD (1.6) |
EA [auth e] | PF00796 | e6pfye1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PF00796 | ECOD (1.6) |
I | PF00796 | e6pfyI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PF00796 | ECOD (1.6) |
R | PF00796 | e6pfyR1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PF00796 | ECOD (1.6) |
J | PF01701 | e6pfyJ1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PF01701 | ECOD (1.6) |
S | PF01701 | e6pfyS1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PF01701 | ECOD (1.6) |
FA [auth f] | PF01701 | e6pfyf1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PF01701 | ECOD (1.6) |
GA [auth g] | PF01241 | e6pfyg1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PF01241 | ECOD (1.6) |
K | PF01241 | e6pfyK1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PF01241 | ECOD (1.6) |
T | PF01241 | e6pfyT1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: PF01241 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family | |
HA [auth h], L, U | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
IA [auth i], M, V | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
JA [auth j], W, X | PF08078 | PsaX family (PsaX) | PsaX family | - | Family |
PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family | |
AA [auth a], C, N | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
BA [auth b], D, O | PF02531 | PsaD (PsaD) | PsaD | - | Family |
CA [auth c], E, P | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
DA [auth d], F, Q | PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family |
EA [auth e], I, R | PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family |
FA [auth f], J, S | PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
GA [auth g], K, T | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | Photosystem I, megahertz XFEL structure |