6FD2
Radical SAM 1,2-diol dehydratase AprD4 in complex with its substrate paromamine
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF04055 | e6fd2B2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF04055 | ECOD (1.6) |
A [auth B] | F_UNCLASSIFIED | e6fd2B1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth A] | PF04055 | e6fd2A1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PF04055 | ECOD (1.6) |
B [auth A] | F_UNCLASSIFIED | e6fd2A2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A] | PF04055 | Radical SAM superfamily (Radical_SAM) | Radical SAM superfamily | Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B], B [auth A] | Putative apramycin biosynthetic oxidoreductase 4 | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A] | IPR007197 | Radical SAM | Domain |
A [auth B], B [auth A] | IPR034466 | Methyltransferase, class B | Family |
A [auth B], B [auth A] | IPR006638 | Elp3/MiaA/NifB-like, radical SAM core domain | Domain |
A [auth B], B [auth A] | IPR034533 | Paromamine deoxygenase | Family |
A [auth B], B [auth A] | IPR023404 | Radical SAM, alpha/beta horseshoe | Homologous Superfamily |