Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
B [auth I]d5n9zi_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
D [auth O]d5n9zo_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
F [auth N]d5n9zn_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
H [auth M]d5n9zm_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
J [auth P]d5n9zp_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
L [auth J]d5n9zj_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
N [auth K]d5n9zk_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
P [auth L]d5n9zl_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
Ad5n9za2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
Ad5n9za1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
C [auth H]d5n9zh2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
C [auth H]d5n9zh1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
E [auth F]d5n9zf2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
E [auth F]d5n9zf1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
G [auth D]d5n9zd2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
G [auth D]d5n9zd1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
I [auth B]d5n9zb2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
I [auth B]d5n9zb1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
K [auth C]d5n9zc2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
K [auth C]d5n9zc1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
M [auth E]d5n9ze2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
M [auth E]d5n9ze1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
O [auth G]d5n9zg2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)
O [auth G]d5n9zg1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain automated matches automated matches (Thalassiosira hyalina ) [TaxId: 1234817 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth I]SCOP2B SuperfamilyRuBisCO small subunit8094981 3001622 SCOP2B (2022-06-29)
D [auth O]SCOP2 FamilyRuBisCO small subunit8094980 4001455 SCOP2 (2022-06-29)
D [auth O]SCOP2 SuperfamilyRuBisCO small subunit8094981 3001622 SCOP2 (2022-06-29)
F [auth N]SCOP2B SuperfamilyRuBisCO small subunit8094981 3001622 SCOP2B (2022-06-29)
H [auth M]SCOP2B SuperfamilyRuBisCO small subunit8094981 3001622 SCOP2B (2022-06-29)
J [auth P]SCOP2B SuperfamilyRuBisCO small subunit8094981 3001622 SCOP2B (2022-06-29)
L [auth J]SCOP2B SuperfamilyRuBisCO small subunit8094981 3001622 SCOP2B (2022-06-29)
N [auth K]SCOP2B SuperfamilyRuBisCO small subunit8094981 3001622 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyRuBisCO small subunit8094981 3001622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth I]PF00101e5n9zI1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
D [auth O]PF00101e5n9zO1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
F [auth N]PF00101e5n9zN1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
H [auth M]PF00101e5n9zM1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
J [auth P]PF00101e5n9zP1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
L [auth J]PF00101e5n9zJ1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
N [auth K]PF00101e5n9zK1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
P [auth L]PF00101e5n9zL1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: PF00101ECOD (1.6)
APF02788e5n9zA1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
APF00016e5n9zA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
C [auth H]PF02788e5n9zH2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
C [auth H]PF00016e5n9zH1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
E [auth F]PF02788e5n9zF2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
E [auth F]PF00016e5n9zF1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
G [auth D]PF02788e5n9zD1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
G [auth D]PF00016e5n9zD2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
I [auth B]PF02788e5n9zB1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
I [auth B]PF00016e5n9zB2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
K [auth C]PF02788e5n9zC2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
K [auth C]PF00016e5n9zC1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
M [auth E]PF02788e5n9zE2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
M [auth E]PF00016e5n9zE1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)
O [auth G]PF02788e5n9zG1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: PF02788ECOD (1.6)
O [auth G]PF00016e5n9zG2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PF00016ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth I]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
D [auth O]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
F [auth N]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
H [auth M]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
J [auth P]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
L [auth J]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
N [auth K]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
P [auth L]3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunitCATH (4.3.0)
A3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
A3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
C [auth H]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
C [auth H]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
E [auth F]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
E [auth F]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
G [auth D]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
G [auth D]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
I [auth B]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
I [auth B]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
K [auth C]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
K [auth C]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
M [auth E]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
M [auth E]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)
O [auth G]3.30.70.150 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RuBisCO large subunit, N-terminal domainCATH (4.3.0)
O [auth G]3.20.20.110 Alpha Beta Alpha-Beta Barrel TIM Barrel Ribulose bisphosphate carboxylase, large subunit, C-terminal domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00101Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)Ribulose bisphosphate carboxylase, small chain- Domain
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
Ribulose bisphosphate carboxylase large chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilyHomologous Superfamily
IPR024681Ribulose bisphosphate carboxylase, small subunitFamily
IPR000894Ribulose bisphosphate carboxylase small subunit, domainDomain
IPR020888Ribulose bisphosphate carboxylase large subunit, type IFamily
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyHomologous Superfamily
IPR020878Ribulose bisphosphate carboxylase, large chain, active siteActive Site
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalDomain
IPR033966RuBisCOFamily
IPR036422RuBisCO large subunit, N-terminal domain superfamilyHomologous Superfamily
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
8RE Parent Component: LYS

CSO Parent Component: CYS

RESIDAA0205

PSI-MOD :  L-cysteine sulfenic acid MOD:00210
HLU Parent Component: LEU

RESIDAA0205

HYP Parent Component: PRO

RESIDAA0205 , AA0030

PSI-MOD :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039
KCX Parent Component: LYS

RESIDAA0205 , AA0030

LYO Parent Component: LYS

RESIDAA0205 , AA0030

M3L Parent Component: LYS

RESIDAA0205 , AA0030 , AA0074

PSI-MOD :  L-cysteine sulfenic acid MOD:00210 , 4-hydroxy-L-proline MOD:00039 , N6,N6,N6-trimethyl-L-lysine MOD:00083