5MDM

Structural intermediates in the fusion associated transition of vesiculovirus glycoprotein

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth E]	d5mdme_	Multi-domain proteins (alpha and beta)	Viral glycoprotein ectodomain-like	Viral glycoprotein ectodomain-like	automated matches	automated matches	(Chandipura virus ) [TaxId: 11272 ],	SCOPe (2.08)
B [auth F]	d5mdmf_	Multi-domain proteins (alpha and beta)	Viral glycoprotein ectodomain-like	Viral glycoprotein ectodomain-like	automated matches	automated matches	(Chandipura virus ) [TaxId: 11272 ],	SCOPe (2.08)
C [auth A]	d5mdma_	Multi-domain proteins (alpha and beta)	Viral glycoprotein ectodomain-like	Viral glycoprotein ectodomain-like	automated matches	automated matches	(Chandipura virus ) [TaxId: 11272 ],	SCOPe (2.08)
D [auth C]	d5mdmc_	Multi-domain proteins (alpha and beta)	Viral glycoprotein ectodomain-like	Viral glycoprotein ectodomain-like	automated matches	automated matches	(Chandipura virus ) [TaxId: 11272 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth E]	SCOP2B Superfamily	Viral glycoprotein ectodomain-like	8054361	3001498	SCOP2B (2022-06-29)
B [auth F]	SCOP2B Superfamily	Viral glycoprotein ectodomain-like	8054361	3001498	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	Viral glycoprotein ectodomain-like	8054361	3001498	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Viral glycoprotein ectodomain-like	8054361	3001498	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth E]	PF00974	e5mdmE2	A: beta barrels	X: PH domain-like	H: first barrel domain in viral glycoproteins (From Topology)	T: first barrel domain in viral glycoproteins	F: PF00974	ECOD (1.6)
A [auth E]	PF00974	e5mdmE3	A: beta barrels	X: PH domain-like	H: second barrel domain in viral glycoproteins (From Topology)	T: second barrel domain in viral glycoproteins	F: PF00974	ECOD (1.6)
A [auth E]	PF00974	e5mdmE1	A: beta complex topology	X: Viral glycoprotein ectodomain-like (From Topology)	H: Viral glycoprotein ectodomain-like (From Topology)	T: Viral glycoprotein ectodomain-like	F: PF00974	ECOD (1.6)
B [auth F]	PF00974	e5mdmF3	A: beta barrels	X: PH domain-like	H: first barrel domain in viral glycoproteins (From Topology)	T: first barrel domain in viral glycoproteins	F: PF00974	ECOD (1.6)
B [auth F]	PF00974	e5mdmF1	A: beta barrels	X: PH domain-like	H: second barrel domain in viral glycoproteins (From Topology)	T: second barrel domain in viral glycoproteins	F: PF00974	ECOD (1.6)
B [auth F]	PF00974	e5mdmF2	A: beta complex topology	X: Viral glycoprotein ectodomain-like (From Topology)	H: Viral glycoprotein ectodomain-like (From Topology)	T: Viral glycoprotein ectodomain-like	F: PF00974	ECOD (1.6)
C [auth A]	PF00974	e5mdmA2	A: beta barrels	X: PH domain-like	H: first barrel domain in viral glycoproteins (From Topology)	T: first barrel domain in viral glycoproteins	F: PF00974	ECOD (1.6)
C [auth A]	PF00974	e5mdmA3	A: beta barrels	X: PH domain-like	H: second barrel domain in viral glycoproteins (From Topology)	T: second barrel domain in viral glycoproteins	F: PF00974	ECOD (1.6)
C [auth A]	PF00974	e5mdmA1	A: beta complex topology	X: Viral glycoprotein ectodomain-like (From Topology)	H: Viral glycoprotein ectodomain-like (From Topology)	T: Viral glycoprotein ectodomain-like	F: PF00974	ECOD (1.6)
D [auth C]	PF00974	e5mdmC2	A: beta barrels	X: PH domain-like	H: first barrel domain in viral glycoproteins (From Topology)	T: first barrel domain in viral glycoproteins	F: PF00974	ECOD (1.6)
D [auth C]	PF00974	e5mdmC3	A: beta barrels	X: PH domain-like	H: second barrel domain in viral glycoproteins (From Topology)	T: second barrel domain in viral glycoproteins	F: PF00974	ECOD (1.6)
D [auth C]	PF00974	e5mdmC1	A: beta complex topology	X: Viral glycoprotein ectodomain-like (From Topology)	H: Viral glycoprotein ectodomain-like (From Topology)	T: Viral glycoprotein ectodomain-like	F: PF00974	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], B [auth F], C [auth A], D [auth C]	PF00974	Rhabdovirus spike glycoprotein (Rhabdo_glycop)	Rhabdovirus spike glycoprotein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], B [auth F], C [auth A], D [auth C]	Glycoprotein	-	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	virion component viral membrane viral envelope membrane cellular anatomical entity virion membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], B [auth F], C [auth A], D [auth C]	IPR001903	Rhabdovirus glycoprotein	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.