5LY6
CryoEM structure of the membrane pore complex of Pneumolysin at 4.5A
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | MAC/CDC-like | 8052020 | 3002081 | SCOP2B (2022-06-29) |
A [auth B] | SCOP2B Superfamily | CDC membrane-sensing domain-like | 8052019 | 3000285 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | Thiol_cytolys_C | e5ly6B2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Perfringolysin O beta sandwich domain (From Topology) | T: Perfringolysin O beta sandwich domain | F: Thiol_cytolys_C | ECOD (1.6) |
A [auth B] | Thiol_cytolysin | e5ly6B1 | A: beta complex topology | X: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains | F: Thiol_cytolysin | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF17440 | Thiol-activated cytolysin beta sandwich domain (Thiol_cytolys_C) | Thiol-activated cytolysin beta sandwich domain | This domain has an immunoglobulin like fold. It is found at the C-terminus of the thiol-activated cytolsin protein. | Domain |
A [auth B] | PF01289 | Thiol-activated cytolysin (Thiol_cytolysin) | Thiol-activated cytolysin | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B] | Pneumolysin |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR038700 | Thiol-activated cytolysin, C-terminal domain superfamily | Homologous Superfamily |
A [auth B] | IPR036359 | Thiol-activated cytolysin superfamily | Homologous Superfamily |
A [auth B] | IPR035390 | Thiol-activated cytolysin C-terminal | Domain |
A [auth B] | IPR001869 | Thiol-activated cytolysin | Family |
A [auth B] | IPR036363 | Thiol-activated cytolysin, alpha-beta domain superfamily | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Monotopic/peripheral | All beta monotopic/peripheral | Cholesterol-dependent cytolysin | Thiol-activated cytolysin |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Adventitious Membrane Proteins: Beta-sheet Pore-forming Toxins/Attack Complexes | Pneumolysin (PLY) complex |