5JK7
The X-ray structure of the DDB1-DCAF1-Vpr-UNG2 complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | WD40 repeat-like | 8052531 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | WD40 repeat-like | 8051194 | 3001694 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | WD40 repeat-like | 8052531 | 3001694 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | WD40 repeat-like | 8052530 | 3001694 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Uracil-DNA glycosylase-like | 8042482 | 3001106 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Uracil-DNA glycosylase-like | 8042482 | 3001106 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03178,PF10433 | e5jk7A1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF03178,PF10433 | ECOD (1.6) |
A | PF10433 | e5jk7A2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF10433 | ECOD (1.6) |
A | PF03178 | e5jk7A4 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF03178 | ECOD (1.6) |
B | PF03178,PF10433 | e5jk7B2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF03178,PF10433 | ECOD (1.6) |
B | PF10433 | e5jk7B4 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF10433 | ECOD (1.6) |
B | PF03178 | e5jk7B3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF03178 | ECOD (1.6) |
C | F_UNCLASSIFIED | e5jk7C1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: F_UNCLASSIFIED | ECOD (1.6) |
E | F_UNCLASSIFIED | e5jk7E1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF03167 | e5jk7D1 | A: a/b three-layered sandwiches | X: Uracil-DNA glycosylase-like (From Topology) | H: Uracil-DNA glycosylase-like (From Topology) | T: Uracil-DNA glycosylase-like | F: PF03167 | ECOD (1.6) |
G | PF03167 | e5jk7G1 | A: a/b three-layered sandwiches | X: Uracil-DNA glycosylase-like (From Topology) | H: Uracil-DNA glycosylase-like (From Topology) | T: Uracil-DNA glycosylase-like | F: PF03167 | ECOD (1.6) |
F | PF00522 | e5jk7F1 | A: alpha bundles | X: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | H: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | T: Viral accessory protein x (Vpx) / viral protein r (Vpr) | F: PF00522 | ECOD (1.6) |
H | PF00522 | e5jk7H1 | A: alpha bundles | X: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | H: Viral accessory protein x (Vpx) / viral protein r (Vpr) (From Topology) | T: Viral accessory protein x (Vpx) / viral protein r (Vpr) | F: PF00522 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF10433 | Mono-functional DNA-alkylating methyl methanesulfonate N-term (MMS1_N) | Mono-functional DNA-alkylating methyl methanesulfonate N-term | - | Repeat | |
PF03178 | CPSF A subunit region (CPSF_A) | CPSF A subunit region | - | Repeat | |
PF03167 | Uracil DNA glycosylase superfamily (UDG) | Uracil DNA glycosylase superfamily | - | Domain | |
PF00522 | VPR/VPX protein (VPR) | VPR/VPX protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR018846 | Cleavage/polyadenylation specificity factor, A subunit, N-terminal | Domain | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR004871 | Cleavage/polyadenylation specificity factor, A subunit, C-terminal | Domain | |
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR011989 | Armadillo-like helical | Homologous Superfamily | |
IPR033270 | VPRBP/DCAF1 family | Family | |
IPR006594 | LIS1 homology motif | Conserved Site | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR036895 | Uracil-DNA glycosylase-like domain superfamily | Homologous Superfamily | |
IPR002043 | Uracil-DNA glycosylase family 1 | Family | |
IPR018085 | Uracil-DNA glycosylase, active site | Active Site | |
IPR005122 | Uracil-DNA glycosylase-like | Domain | |
IPR000012 | Retroviral VpR/VpX protein | Family |