5JER
Structure of Rotavirus NSP1 bound to IRF-3
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth A] | SCOP2B Superfamily | SMAD/FHA domain-like | 8003522 | 3000137 | SCOP2B (2022-06-29) |
F [auth C] | SCOP2B Superfamily | SMAD/FHA domain-like | 8003522 | 3000137 | SCOP2B (2022-06-29) |
G [auth E] | SCOP2B Superfamily | SMAD/FHA domain-like | 8003522 | 3000137 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | SMAD/FHA domain-like | 8003522 | 3000137 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | PF10401 | e5jerA1 | A: beta sandwiches | X: SMAD/FHA domain (From Topology) | H: SMAD/FHA domain (From Topology) | T: SMAD/FHA domain | F: PF10401 | ECOD (1.6) |
F [auth C] | PF10401 | e5jerC1 | A: beta sandwiches | X: SMAD/FHA domain (From Topology) | H: SMAD/FHA domain (From Topology) | T: SMAD/FHA domain | F: PF10401 | ECOD (1.6) |
G [auth E] | PF10401 | e5jerE1 | A: beta sandwiches | X: SMAD/FHA domain (From Topology) | H: SMAD/FHA domain (From Topology) | T: SMAD/FHA domain | F: PF10401 | ECOD (1.6) |
H [auth G] | PF10401 | e5jerG1 | A: beta sandwiches | X: SMAD/FHA domain (From Topology) | H: SMAD/FHA domain (From Topology) | T: SMAD/FHA domain | F: PF10401 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E [auth A] | 2.60.200.10 | Mainly Beta | Sandwich | Tumour Suppressor Smad4 | CATH (4.3.0) | |
F [auth C] | 2.60.200.10 | Mainly Beta | Sandwich | Tumour Suppressor Smad4 | CATH (4.3.0) | |
G [auth E] | 2.60.200.10 | Mainly Beta | Sandwich | Tumour Suppressor Smad4 | CATH (4.3.0) | |
H [auth G] | 2.60.200.10 | Mainly Beta | Sandwich | Tumour Suppressor Smad4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth D], C [auth F], D [auth H] | PF00981 | Rotavirus RNA-binding Protein 53 (NS53) (Rota_NS53) | Rotavirus RNA-binding Protein 53 (NS53) | - | Family |
E [auth A], F [auth C], G [auth E], H [auth G] | PF10401 | Interferon-regulatory factor 3 (IRF-3) | Interferon-regulatory factor 3 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth D], C [auth F], D [auth H] | IPR002148 | Rotavirus non-structural protein 1 | Family |
E [auth A], F [auth C], G [auth E], H [auth G] | IPR019817 | Interferon regulatory factor, conserved site | Conserved Site |
E [auth A], F [auth C], G [auth E], H [auth G] | IPR019471 | Interferon regulatory factor-3 | Domain |
E [auth A], F [auth C], G [auth E], H [auth G] | IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily |
E [auth A], F [auth C], G [auth E], H [auth G] | IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |
E [auth A], F [auth C], G [auth E], H [auth G] | IPR017855 | SMAD-like domain superfamily | Homologous Superfamily |
E [auth A], F [auth C], G [auth E], H [auth G] | IPR001346 | Interferon regulatory factor, DNA-binding domain | Domain |
E [auth A], F [auth C], G [auth E], H [auth G] | IPR008984 | SMAD/FHA domain superfamily | Homologous Superfamily |