5IMY
Trapped Toxin
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Perfringolysin-like | 8052007 | 4003121 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | CDC membrane-sensing domain-like | 8052025 | 3000285 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | MAC/CDC-like | 8052026 | 3002081 | SCOP2 (2022-06-29) |
D [auth B] | SCOP2B Superfamily | MAC/CDC-like | 8052026 | 3002081 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | CDC membrane-sensing domain-like | 8052025 | 3000285 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Snake toxin-like | 8034633 | 3000545 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Snake toxin-like | 8034633 | 3000545 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF17440 | e5imyA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Perfringolysin O beta sandwich domain (From Topology) | T: Perfringolysin O beta sandwich domain | F: PF17440 | ECOD (1.6) |
A | PF01289 | e5imyA2 | A: beta complex topology | X: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains | F: PF01289 | ECOD (1.6) |
D [auth B] | PF17440 | e5imyB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Perfringolysin O beta sandwich domain (From Topology) | T: Perfringolysin O beta sandwich domain | F: PF17440 | ECOD (1.6) |
D [auth B] | PF01289 | e5imyB1 | A: beta complex topology | X: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | H: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains (From Topology) | T: Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains | F: PF01289 | ECOD (1.6) |
B [auth C] | PF00021 | e5imyC1 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: PF00021 | ECOD (1.6) |
C [auth D] | PF00021 | e5imyD1 | A: few secondary structure elements | X: Snake toxin-like (From Topology) | H: Snake toxin-like (From Topology) | T: Snake toxin-like | F: PF00021 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.840.10 | Alpha Beta | Alpha-Beta Complex | HIV-1 Reverse Transcriptase | Chain A, domain 3 | CATH (utative) |
A | 3.30.1040.20 | Alpha Beta | 2-Layer Sandwich | Carboxypeptidase Inhibitor | Chain A | CATH (utative) |
A | 3.40.30.40 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Perfringolysin | CATH (utative) |
A | 2.60.40.1430 | Mainly Beta | Sandwich | Immunoglobulin-like | Perfringolysin, domain 4 | CATH (utative) |
D [auth B] | 3.90.840.10 | Alpha Beta | Alpha-Beta Complex | HIV-1 Reverse Transcriptase | Chain A, domain 3 | CATH (utative) |
D [auth B] | 3.30.1040.20 | Alpha Beta | 2-Layer Sandwich | Carboxypeptidase Inhibitor | Chain A | CATH (utative) |
D [auth B] | 3.40.30.40 | Alpha Beta | 3-Layer(aba) Sandwich | Glutaredoxin | Perfringolysin | CATH (utative) |
D [auth B] | 2.60.40.1430 | Mainly Beta | Sandwich | Immunoglobulin-like | Perfringolysin, domain 4 | CATH (utative) |
B [auth C] | 2.10.60.10 | Mainly Beta | Ribbon | CD59 | CD59 | CATH (4.3.0) |
C [auth D] | 2.10.60.10 | Mainly Beta | Ribbon | CD59 | CD59 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B] | PF17440 | Thiol-activated cytolysin beta sandwich domain (Thiol_cytolys_C) | Thiol-activated cytolysin beta sandwich domain | This domain has an immunoglobulin like fold. It is found at the C-terminus of the thiol-activated cytolsin protein. | Domain |
A, D [auth B] | PF01289 | Thiol-activated cytolysin (Thiol_cytolysin) | Thiol-activated cytolysin | - | Family |
B [auth C], C [auth D] | PF00021 | u-PAR/Ly-6 domain (UPAR_LY6) | u-PAR/Ly-6 domain | This extracellular disulphide bond rich domain is related to Pfam:PF00087. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth B] | IPR038700 | Thiol-activated cytolysin, C-terminal domain superfamily | Homologous Superfamily |
A, D [auth B] | IPR036359 | Thiol-activated cytolysin superfamily | Homologous Superfamily |
A, D [auth B] | IPR035390 | Thiol-activated cytolysin C-terminal | Domain |
A, D [auth B] | IPR001869 | Thiol-activated cytolysin | Family |
A, D [auth B] | IPR036363 | Thiol-activated cytolysin, alpha-beta domain superfamily | Homologous Superfamily |
B [auth C], C [auth D] | IPR045860 | Snake toxin-like superfamily | Homologous Superfamily |
B [auth C], C [auth D] | IPR016054 | Ly-6 antigen/uPA receptor-like | Domain |
B [auth C], C [auth D] | IPR018363 | CD59 antigen, conserved site | Conserved Site |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Monotopic/peripheral | All beta monotopic/peripheral | Cholesterol-dependent cytolysin | Thiol-activated cytolysin |