5EJK
Crystal structure of the Rous sarcoma virus intasome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8041682 | 3000355 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8041682 | 3000355 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8041682 | 3000355 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8041682 | 3000355 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8041682 | 3000355 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8041682 | 3000355 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8041682 | 3000355 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | DNA-binding domain of retroviral integrase | 8041682 | 3000355 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | IN_DBD_C | e5ejkA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
A | Integrase_Zn | e5ejkA3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
A | rve | e5ejkA2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
B | IN_DBD_C | e5ejkB2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
B | Integrase_Zn | e5ejkB4 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
B | rve | e5ejkB3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
C | IN_DBD_C | e5ejkC2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
C | Integrase_Zn | e5ejkC4 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
C | rve | e5ejkC3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
D | IN_DBD_C | e5ejkD2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
D | Integrase_Zn | e5ejkD4 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
D | rve | e5ejkD3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
E | IN_DBD_C | e5ejkE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
E | Integrase_Zn | e5ejkE3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
E | rve | e5ejkE2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
F | IN_DBD_C | e5ejkF2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
F | Integrase_Zn | e5ejkF4 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
F | rve | e5ejkF3 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
G | IN_DBD_C | e5ejkG1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
G | Integrase_Zn | e5ejkG3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
G | rve | e5ejkG2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
H | IN_DBD_C | e5ejkH1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: IN_DBD_C | ECOD (1.6) |
H | Integrase_Zn | e5ejkH3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Integrase_Zn | ECOD (1.6) |
H | rve | e5ejkH2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: rve | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02022 | Integrase Zinc binding domain (Integrase_Zn) | Integrase Zinc binding domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain Pfam:PF00665 ... | Domain | |
PF00552 | Integrase DNA binding domain (IN_DBD_C) | Integrase DNA binding domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain. The central domain is the catalytic domain Pfam:PF00665. This do ... | Domain | |
PF00665 | Integrase core domain (rve) | Integrase core domain | Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The ca ... | Domain | |