4U8H
Crystal Structure of Mammalian Period-Cryptochrome Complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4u8ha2 | All alpha proteins | Cryptochrome/photolyase FAD-binding domain | Cryptochrome/photolyase FAD-binding domain | Cryptochrome/photolyase FAD-binding domain | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A | d4u8ha1 | Alpha and beta proteins (a/b) | Cryptochrome/photolyase, N-terminal domain | Cryptochrome/photolyase, N-terminal domain | automated matches | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B [auth C] | d4u8hc2 | All alpha proteins | Cryptochrome/photolyase FAD-binding domain | Cryptochrome/photolyase FAD-binding domain | Cryptochrome/photolyase FAD-binding domain | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B [auth C] | d4u8hc1 | Alpha and beta proteins (a/b) | Cryptochrome/photolyase, N-terminal domain | Cryptochrome/photolyase, N-terminal domain | automated matches | automated matches | Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03441 | e4u8hA1 | A: alpha complex topology | X: Cryptochrome/photolyase FAD-binding domain-related (From Homology) | H: Cryptochrome/photolyase FAD-binding domain-related | T: Cryptochrome/photolyase FAD-binding domain | F: PF03441 | ECOD (1.6) |
A | PF00875 | e4u8hA2 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: PF00875 | ECOD (1.6) |
B [auth C] | PF03441 | e4u8hC1 | A: alpha complex topology | X: Cryptochrome/photolyase FAD-binding domain-related (From Homology) | H: Cryptochrome/photolyase FAD-binding domain-related | T: Cryptochrome/photolyase FAD-binding domain | F: PF03441 | ECOD (1.6) |
B [auth C] | PF00875 | e4u8hC2 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: PF00875 | ECOD (1.6) |
C [auth B] | PF12114 | e4u8hB1 | A: extended segments | X: CRY-binding domain of PER (From Topology) | H: CRY-binding domain of PER (From Topology) | T: CRY-binding domain of PER | F: PF12114 | ECOD (1.6) |
D | PF12114 | e4u8hD1 | A: extended segments | X: CRY-binding domain of PER (From Topology) | H: CRY-binding domain of PER (From Topology) | T: CRY-binding domain of PER | F: PF12114 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
A | 1.25.40.80 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
A | 1.10.579.10 | Mainly Alpha | Orthogonal Bundle | DNA Cyclobutane Dipyrimidine Photolyase, subunit A | domain 3 | CATH (4.3.0) |
B [auth C] | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
B [auth C] | 1.25.40.80 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
B [auth C] | 1.10.579.10 | Mainly Alpha | Orthogonal Bundle | DNA Cyclobutane Dipyrimidine Photolyase, subunit A | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C] | PF00875 | DNA photolyase (DNA_photolyase) | DNA photolyase | This domain binds a light harvesting cofactor. | Domain |
A, B [auth C] | PF03441 | FAD binding domain of DNA photolyase (FAD_binding_7) | FAD binding domain of DNA photolyase | - | Domain |
C [auth B], D | PF12114 | Period protein 2/3C-terminal region (Period_C) | Period protein 2/3C-terminal region | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, B [auth C] | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | Homologous Superfamily |
A, B [auth C] | IPR036155 | Cryptochrome/photolyase, N-terminal domain superfamily | Homologous Superfamily |
A, B [auth C] | IPR002081 | Cryptochrome/DNA photolyase class 1 | Family |
A, B [auth C] | IPR036134 | Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily | Homologous Superfamily |
A, B [auth C] | IPR006050 | DNA photolyase, N-terminal | Domain |
A, B [auth C] | IPR005101 | Cryptochrome/DNA photolyase, FAD-binding domain | Domain |
C [auth B], D | IPR013655 | PAS fold-3 | Domain |
C [auth B], D | IPR022728 | Period circadian-like, C-terminal | Domain |
C [auth B], D | IPR000014 | PAS domain | Domain |
C [auth B], D | IPR048814 | Period circadian protein homolog 1-3, PAS-A domain | Domain |
C [auth B], D | IPR035965 | PAS domain superfamily | Homologous Superfamily |