4RRG
Editing domain of threonyl-tRNA synthetase from Methanococcus jannaschii with L-Thr3AA
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4rrga_ | Alpha and beta proteins (a/b) | DTD-like | DTD-like | automated matches | automated matches | (Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ], | SCOPe (2.08) |
B | d4rrgb_ | Alpha and beta proteins (a/b) | DTD-like | DTD-like | automated matches | automated matches | (Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ], | SCOPe (2.08) |
C | d4rrgc_ | Alpha and beta proteins (a/b) | DTD-like | DTD-like | automated matches | automated matches | (Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ], | SCOPe (2.08) |
D | d4rrgd_ | Alpha and beta proteins (a/b) | DTD-like | DTD-like | automated matches | automated matches | (Methanocaldococcus jannaschii DSM 2661 ) [TaxId: 243232 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | DTD-like | 8055880 | 3000522 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DTD-like | 8055880 | 3000522 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | DTD-like | 8055880 | 3000522 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | DTD-like | 8055880 | 3000522 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF08915 | e4rrgA1 | A: a/b three-layered sandwiches | X: DTD-like | H: DTD-like (Pfam 02580) (From Topology) | T: DTD-like (Pfam 02580) | F: PF08915 | ECOD (1.6) |
B | PF08915 | e4rrgB1 | A: a/b three-layered sandwiches | X: DTD-like | H: DTD-like (Pfam 02580) (From Topology) | T: DTD-like (Pfam 02580) | F: PF08915 | ECOD (1.6) |
C | PF08915 | e4rrgC1 | A: a/b three-layered sandwiches | X: DTD-like | H: DTD-like (Pfam 02580) (From Topology) | T: DTD-like (Pfam 02580) | F: PF08915 | ECOD (1.6) |
D | PF08915 | e4rrgD1 | A: a/b three-layered sandwiches | X: DTD-like | H: DTD-like (Pfam 02580) (From Topology) | T: DTD-like (Pfam 02580) | F: PF08915 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.50.80.10 | Alpha Beta | 3-Layer(bba) Sandwich | D-tyrosyl-trna(Tyr) Deacylase | Chain: A | CATH (4.3.0) |
B | 3.50.80.10 | Alpha Beta | 3-Layer(bba) Sandwich | D-tyrosyl-trna(Tyr) Deacylase | Chain: A | CATH (4.3.0) |
C | 3.50.80.10 | Alpha Beta | 3-Layer(bba) Sandwich | D-tyrosyl-trna(Tyr) Deacylase | Chain: A | CATH (4.3.0) |
D | 3.50.80.10 | Alpha Beta | 3-Layer(bba) Sandwich | D-tyrosyl-trna(Tyr) Deacylase | Chain: A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08915 | Archaea-specific editing domain of threonyl-tRNA synthetase (tRNA-Thr_ED) | Archaea-specific editing domain of threonyl-tRNA synthetase | Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is esp ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR045864 | Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) | Homologous Superfamily | |
IPR033728 | Threonine-tRNA ligase catalytic core domain | Domain | |
IPR023509 | D-aminoacyl-tRNA deacylase-like superfamily | Homologous Superfamily | |
IPR004154 | Anticodon-binding | Domain | |
IPR015011 | Threonyl-tRNA synthetase, editing domain, archaea | Domain | |
IPR006195 | Aminoacyl-tRNA synthetase, class II | Domain | |
IPR047246 | Threonine-tRNA ligase, class IIa, anticodon-binding domain | Domain | |
IPR002314 | Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) | Domain | |
IPR036621 | Anticodon-binding domain superfamily | Homologous Superfamily | |
IPR002320 | Threonine-tRNA ligase, class IIa | Family |