4JNH
A unique spumavirus gag N-terminal domain with functional properties of orthoretroviral Matrix and Capsid
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03276 | e4jnhA1 | A: a+b two layers | X: N-terminal domain of spumavirus gag protein (From Topology) | H: N-terminal domain of spumavirus gag protein (From Topology) | T: N-terminal domain of spumavirus gag protein | F: PF03276 | ECOD (1.6) |
B | PF03276 | e4jnhB1 | A: a+b two layers | X: N-terminal domain of spumavirus gag protein (From Topology) | H: N-terminal domain of spumavirus gag protein (From Topology) | T: N-terminal domain of spumavirus gag protein | F: PF03276 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.5.1500 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
B | 1.20.5.1500 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03276 | Spumavirus gag protein, N-terminal (Gag_spuma_N) | Spumavirus gag protein, N-terminal | This is the conserved N-terminal domain of the Gag polyprotein from Foamyviruses (FVs) or Spuma-retroviruses. Gag is the major structural protein required for genome packaging virion assembly, trafficking and egress. This region corresponds to the En ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004957 | Gag polyprotein, N-terminal domain | Domain | |
IPR049099 | Gag polyprotein, C-terminal | Domain | |
IPR049101 | Gag polyprotein, conserved central domain | Domain |