Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEUF08091e4ewcA3 A: alpha bundlesX: Helical bundle in flu nucleocapsid protein (From Topology)H: Helical bundle in flu nucleocapsid protein (From Topology)T: Helical bundle in flu nucleocapsid proteinF: EUF08091ECOD (1.6)
AEUF08425e4ewcA1 A: a+b two layersX: Salmon anemia virus nucleoprotein N-terminal domain (From Topology)H: Salmon anemia virus nucleoprotein N-terminal domain (From Topology)T: Salmon anemia virus nucleoprotein N-terminal domainF: EUF08425ECOD (1.6)
AEUF08567e4ewcA2 A: a+b complex topologyX: Flu NP-like (From Topology)H: Flu NP-like (From Topology)T: Flu NP-likeF: EUF08567ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.20.25.560 Mainly Beta Single Sheet N-terminal domain of TfIIb CATH (4.3.0)
A1.20.120.1660 Mainly Alpha Up-down Bundle Four Helix Bundle (Hemerythrin (Met), subunit A) CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF21453Infectious salmon anemia virus nucleoprotein, helical bundle (NCAP_ISAV_hel)Infectious salmon anemia virus nucleoprotein, helical bundleThis entry represents the helical bundle of Infectious salmon anemia virus (ISAV) nucleoprotein that forms the head domain described in [1]. The head and body domains from this protein affect the equilibrium-state RNA binding.Domain
PF21422Orthomyxovirus nucleoprotein, C-terminal (NP_C_Orthomyx)Orthomyxovirus nucleoprotein, C-terminalThis entry represents a domain found in the nucleoprotein from the orthomyxovirus Infectious salmon anemia virus [1]. This protein is similar to that in Influenza virus and consists of a head and a body domain [1]. This entry represents the tail loop ...This entry represents a domain found in the nucleoprotein from the orthomyxovirus Infectious salmon anemia virus [1]. This protein is similar to that in Influenza virus and consists of a head and a body domain [1]. This entry represents the tail loop which plays a role in oligomerisation. It folds into an extended beta-hairpin that protrudes into a deep pocket in a neighbouring subunit to mediate dimer formation.
Domain
PF21451Salmon anemia virus nucleoprotein N-terminal domain (NCAP_ISAV_N)Salmon anemia virus nucleoprotein N-terminal domainThis entry represents the N-terminal domain of the Salmon anemia virus nucleoprotein which has an alpha/beta fold [1] consisting of three anti-parallel beta-strands and two alpha helices in an extended shape and interacts with the rest of the structu ...This entry represents the N-terminal domain of the Salmon anemia virus nucleoprotein which has an alpha/beta fold [1] consisting of three anti-parallel beta-strands and two alpha helices in an extended shape and interacts with the rest of the structure [1]. This domain may regulate the dynamics of the NP RNA binding.
Domain