3VK8
Crystal structure of DNA-glycosylase bound to DNA containing Thymine glycol
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01149 | e3vk8A3 | A: beta barrels | X: MutM N-terminal domain-like | H: N-terminal domain of MutM-like DNA repair proteins (From Topology) | T: N-terminal domain of MutM-like DNA repair proteins | F: PF01149 | ECOD (1.6) |
A | PF06831 | e3vk8A1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF06831 | ECOD (1.6) |
A | PF21025 | e3vk8A2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: C-terminal, Zn-finger domain of MutM-like DNA repair proteins (From Topology) | T: C-terminal, Zn-finger domain of MutM-like DNA repair proteins | F: PF21025 | ECOD (1.6) |
B | PF01149 | e3vk8B3 | A: beta barrels | X: MutM N-terminal domain-like | H: N-terminal domain of MutM-like DNA repair proteins (From Topology) | T: N-terminal domain of MutM-like DNA repair proteins | F: PF01149 | ECOD (1.6) |
B | PF06831 | e3vk8B1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF06831 | ECOD (1.6) |
B | PF21025 | e3vk8B2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: C-terminal, Zn-finger domain of MutM-like DNA repair proteins (From Topology) | T: C-terminal, Zn-finger domain of MutM-like DNA repair proteins | F: PF21025 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.190.10 | Alpha Beta | Alpha-Beta Barrel | N-terminal domain of MutM-like DNA repair proteins | MutM-like, N-terminal | CATH (4.3.0) |
A | 1.10.8.50 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
B | 3.20.190.10 | Alpha Beta | Alpha-Beta Barrel | N-terminal domain of MutM-like DNA repair proteins | MutM-like, N-terminal | CATH (4.3.0) |
B | 1.10.8.50 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21025 | Formamidopyrimidine-DNA glycosylase C-terminal domain (Fapy_DNA_glyco_C) | Formamidopyrimidine-DNA glycosylase C-terminal domain | This entry represents a small C-terminal zinc finger domain found in a small subset of Formamidopyrimidine-DNA glycosylase enzymes. | Domain | |
PF06831 | Formamidopyrimidine-DNA glycosylase H2TH domain (H2TH) | Formamidopyrimidine-DNA glycosylase H2TH domain | Formamidopyrimidine-DNA glycosylase (Fpg) is a DNA repair enzyme that excises oxidised purines from damaged DNA. This family is the central domain containing the DNA-binding helix-two turn-helix domain [1]. | Domain | |
PF01149 | Formamidopyrimidine-DNA glycosylase N-terminal domain (Fapy_DNA_glyco) | Formamidopyrimidine-DNA glycosylase N-terminal domain | Formamidopyrimidine-DNA glycosylase (Fpg) is a DNA repair enzyme that excises oxidised purines from damaged DNA. This family is the N-terminal domain contains eight beta-strands, forming a beta-sandwich with two alpha-helices parallel to its edges [1 ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015886 | DNA glycosylase/AP lyase, H2TH DNA-binding | Domain | |
IPR035937 | MutM-like, N-terminal | Homologous Superfamily | |
IPR012319 | Formamidopyrimidine-DNA glycosylase, catalytic domain | Domain | |
IPR049392 | Formamidopyrimidine-DNA glycosylase, C-terminal domain | Domain | |
IPR010979 | Small ribosomal subunit protein uS13-like, H2TH | Homologous Superfamily |