3UPU
Crystal structure of the T4 Phage SF1B Helicase Dda
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | EUF07573 | e3upuA2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EUF07573 | ECOD (1.6) |
A | AAA_19 | e3upuA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_19 | ECOD (1.6) |
A | UvrD_C_2 | e3upuA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: UvrD_C_2 | ECOD (1.6) |
B | EUF07573 | e3upuB6 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EUF07573 | ECOD (1.6) |
B | AAA_19 | e3upuB5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_19 | ECOD (1.6) |
B | UvrD_C_2 | e3upuB4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: UvrD_C_2 | ECOD (1.6) |
C | EUF07573 | e3upuC6 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: EUF07573 | ECOD (1.6) |
C | AAA_19 | e3upuC5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_19 | ECOD (1.6) |
C | UvrD_C_2 | e3upuC4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: UvrD_C_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 2.30.30.780 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 2.30.30.780 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
C | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
C | 2.30.30.780 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13604 | AAA domain (AAA_30) | AAA domain | This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B. | Domain | |
PF18343 | Dda helicase SH3 domain (SH3_14) | Dda helicase SH3 domain | This is a Src homology-3 (SH3) like beta-barrel domain which can be found in Dda enzyme. Dda is a phage T4 SF1B helicase. The Dda SH3 domain contains two insertions (compared to RecD2), a second beta-ribbon that is referred to as the hook and a beta- ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR041214 | Dda helicase SH3 domain | Domain | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |