3FMG
Structure of rotavirus outer capsid protein VP7 trimer in complex with a neutralizing Fab
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth L] | d3fmgl1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A [auth L] | d3fmgl2 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | C1 set domains (antibody constant domain-like) | automated matches | (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth L] | C1-set_4 | e3fmgL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
A [auth L] | V-set | e3fmgL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
B [auth H] | V-set_8 | e3fmgH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B [auth H] | C1-set_1 | e3fmgH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C [auth A] | VP7_2nd | e3fmgA2 | A: beta sandwiches | X: jelly-roll | H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology) | T: Jelly-roll domain in outer capsid glycoprotein VP7 | F: VP7_2nd | ECOD (1.6) |
C [auth A] | VP7_1st | e3fmgA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology) | T: Flavodoxin-like domain in outer capsid glycoprotein VP7 | F: VP7_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
C [auth A] | 3.40.50.11130 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Glycoprotein VP7, domain 1 | CATH (4.3.0) |
C [auth A] | 2.60.120.800 | Mainly Beta | Sandwich | Jelly Rolls | Rotavirus outer-layer protein VP7, domain 2 | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth L] | 4F8 neutralizing Simian rotavirus | L-KAPPA | Mus musculus (house mouse) | IGKV12-44*01, IGKJ5*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202415-0) |
B [auth H] | 4F8 neutralizing Simian rotavirus | VH-CH1 | Mus musculus (house mouse) | IGHV1-9*01, IGHJ2*02, IGHJ2*03, IGHG1*01 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202415-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth L] | Light Chain | IGKV12 | Kappa | glycoprotein vp7 | SAbDab (2024-04-19) |
B [auth H] | Heavy Chain | IGHV1 | - | glycoprotein vp7 | SAbDab (2024-04-19) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A] | PF00434 | Glycoprotein VP7 (VP7) | Glycoprotein VP7 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A] | IPR042207 | Glycoprotein VP7, domain 1 | Homologous Superfamily |
C [auth A] | IPR001963 | Glycoprotein VP7 | Family |
C [auth A] | IPR042210 | Glycoprotein VP7, domain 2 | Homologous Superfamily |