3F9K

Two domain fragment of HIV-2 integrase in complex with LEDGF IBD

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
BA [auth k]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
CA [auth l]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
EA [auth o]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
FA [auth p]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
G [auth I]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
H [auth J]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
HA [auth s]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
IA [auth t]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
J [auth M]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
K [auth N]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
M [auth Q]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
N [auth R]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
P [auth U]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
Q [auth V]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
S [auth Y]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
T [auth Z]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
V [auth c]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
W [auth d]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
Y [auth g]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
Z [auth h]	SCOP2B Superfamily	N-terminal Zn binding domain of HIV integrase-like	8032485	3001203	SCOP2B (2022-06-29)
AA [auth i]	SCOP2B Superfamily	HIV integrase-binding domain	8035439	3001321	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	HIV integrase-binding domain	8035439	3001321	SCOP2B (2022-06-29)
DA [auth m]	SCOP2B Superfamily	HIV integrase-binding domain	8035439	3001321	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	HIV integrase-binding domain	8035439	3001321	SCOP2B (2022-06-29)
GA [auth q]	SCOP2B Superfamily	HIV integrase-binding domain	8035439	3001321	SCOP2B (2022-06-29)
I [auth K]	SCOP2B Superfamily	HIV integrase-binding domain	8035439	3001321	SCOP2B (2022-06-29)
JA [auth u]	SCOP2B Superfamily	HIV integrase-binding domain	8035439	3001321	SCOP2B (2022-06-29)
L [auth O]	SCOP2B Superfamily	HIV integrase-binding domain	8035439	3001321	SCOP2B (2022-06-29)
O [auth S]	SCOP2B Superfamily	HIV integrase-binding domain	8035439	3001321	SCOP2B (2022-06-29)
R [auth W]	SCOP2B Superfamily	HIV integrase-binding domain	8035439	3001321	SCOP2B (2022-06-29)
U [auth a]	SCOP2B Superfamily	HIV integrase-binding domain	8035439	3001321	SCOP2B (2022-06-29)
X [auth e]	SCOP2B Superfamily	HIV integrase-binding domain	8035439	3001321	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Integrase_Zn	e3f9kA1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
A	rve	e3f9kA2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
B	Integrase_Zn	e3f9kB1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
B	rve	e3f9kB2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
BA [auth k]	Integrase_Zn	e3f9kk1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
BA [auth k]	rve	e3f9kk2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
CA [auth l]	Integrase_Zn	e3f9kl1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
CA [auth l]	rve	e3f9kl2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
D [auth E]	Integrase_Zn	e3f9kE1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
D [auth E]	rve	e3f9kE2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
E [auth F]	Integrase_Zn	e3f9kF1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
E [auth F]	rve	e3f9kF2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
EA [auth o]	Integrase_Zn	e3f9ko1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
EA [auth o]	rve	e3f9ko2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
FA [auth p]	Integrase_Zn	e3f9kp1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
FA [auth p]	rve	e3f9kp2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
G [auth I]	Integrase_Zn	e3f9kI1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
G [auth I]	rve	e3f9kI2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
H [auth J]	Integrase_Zn	e3f9kJ1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
H [auth J]	rve	e3f9kJ2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
HA [auth s]	Integrase_Zn	e3f9ks1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
HA [auth s]	rve	e3f9ks2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
IA [auth t]	Integrase_Zn	e3f9kt1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
IA [auth t]	rve	e3f9kt2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
J [auth M]	Integrase_Zn	e3f9kM1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
J [auth M]	rve	e3f9kM2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
K [auth N]	Integrase_Zn	e3f9kN1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
K [auth N]	rve	e3f9kN2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
M [auth Q]	Integrase_Zn	e3f9kQ1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
M [auth Q]	rve	e3f9kQ2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
N [auth R]	Integrase_Zn	e3f9kR1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
N [auth R]	rve	e3f9kR2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
P [auth U]	Integrase_Zn	e3f9kU1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
P [auth U]	rve	e3f9kU2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
Q [auth V]	Integrase_Zn	e3f9kV1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
Q [auth V]	rve	e3f9kV2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
S [auth Y]	Integrase_Zn	e3f9kY1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
S [auth Y]	rve	e3f9kY2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
T [auth Z]	Integrase_Zn	e3f9kZ1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
T [auth Z]	rve	e3f9kZ2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
V [auth c]	Integrase_Zn	e3f9kc1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
V [auth c]	rve	e3f9kc2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
W [auth d]	Integrase_Zn	e3f9kd1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
W [auth d]	rve	e3f9kd2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
Y [auth g]	Integrase_Zn	e3f9kg1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
Y [auth g]	rve	e3f9kg2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
Z [auth h]	Integrase_Zn	e3f9kh1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: Integrase_Zn	ECOD (1.6)
Z [auth h]	rve	e3f9kh2	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: rve	ECOD (1.6)
AA [auth i]	LEDGF	e3f9ki1	A: alpha bundles	X: N-cbl like	H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology)	T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	F: LEDGF	ECOD (1.6)
C	LEDGF	e3f9kC1	A: alpha bundles	X: N-cbl like	H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology)	T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	F: LEDGF	ECOD (1.6)
DA [auth m]	LEDGF	e3f9km1	A: alpha bundles	X: N-cbl like	H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology)	T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	F: LEDGF	ECOD (1.6)
F [auth G]	LEDGF	e3f9kG1	A: alpha bundles	X: N-cbl like	H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology)	T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	F: LEDGF	ECOD (1.6)
GA [auth q]	LEDGF	e3f9kq1	A: alpha bundles	X: N-cbl like	H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology)	T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	F: LEDGF	ECOD (1.6)
I [auth K]	LEDGF	e3f9kK1	A: alpha bundles	X: N-cbl like	H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology)	T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	F: LEDGF	ECOD (1.6)
JA [auth u]	LEDGF	e3f9ku1	A: alpha bundles	X: N-cbl like	H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology)	T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	F: LEDGF	ECOD (1.6)
L [auth O]	LEDGF	e3f9kO1	A: alpha bundles	X: N-cbl like	H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology)	T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	F: LEDGF	ECOD (1.6)
O [auth S]	LEDGF	e3f9kS1	A: alpha bundles	X: N-cbl like	H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology)	T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	F: LEDGF	ECOD (1.6)
R [auth W]	LEDGF	e3f9kW1	A: alpha bundles	X: N-cbl like	H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology)	T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	F: LEDGF	ECOD (1.6)
U [auth a]	LEDGF	e3f9ka1	A: alpha bundles	X: N-cbl like	H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology)	T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	F: LEDGF	ECOD (1.6)
X [auth e]	LEDGF	e3f9ke1	A: alpha bundles	X: N-cbl like	H: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 (From Topology)	T: Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	F: LEDGF	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
A	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
B	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
B	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
BA [auth k]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
BA [auth k]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
CA [auth l]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
CA [auth l]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
D [auth E]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
D [auth E]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
E [auth F]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
E [auth F]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
EA [auth o]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
EA [auth o]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
FA [auth p]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
FA [auth p]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
G [auth I]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
G [auth I]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
H [auth J]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
H [auth J]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
HA [auth s]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
HA [auth s]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
IA [auth t]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
IA [auth t]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
J [auth M]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
J [auth M]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
K [auth N]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
K [auth N]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
M [auth Q]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
M [auth Q]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
N [auth R]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
N [auth R]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
P [auth U]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
P [auth U]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
Q [auth V]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
Q [auth V]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
S [auth Y]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
S [auth Y]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
T [auth Z]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
T [auth Z]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
V [auth c]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
V [auth c]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
W [auth d]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
W [auth d]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
Y [auth g]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
Y [auth g]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
Z [auth h]	1.10.10.200	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Integrase, N-terminal zinc-binding domain	CATH (4.3.0)
Z [auth h]	3.30.420.10	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
AA [auth i]	1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II	Chain A	CATH (4.3.0)
C	1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II	Chain A	CATH (4.3.0)
DA [auth m]	1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II	Chain A	CATH (4.3.0)
F [auth G]	1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II	Chain A	CATH (4.3.0)
GA [auth q]	1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II	Chain A	CATH (4.3.0)
I [auth K]	1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II	Chain A	CATH (4.3.0)
JA [auth u]	1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II	Chain A	CATH (4.3.0)
L [auth O]	1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II	Chain A	CATH (4.3.0)
O [auth S]	1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II	Chain A	CATH (4.3.0)
R [auth W]	1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II	Chain A	CATH (4.3.0)
U [auth a]	1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II	Chain A	CATH (4.3.0)
X [auth e]	1.20.930.10	Mainly Alpha	Up-down Bundle	Transcription Elongation Factor S-II	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	PF02022	Integrase Zinc binding domain (Integrase_Zn)	Integrase Zinc binding domain	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain Pfam:PF00665 ...	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. This domain is the amino-terminal domain zinc binding domain. The central domain is the catalytic domain Pfam:PF00665. The carboxyl terminal domain is a DNA binding domain Pfam:PF00552.	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	PF00665	Integrase core domain (rve)	Integrase core domain	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The ca ...	Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain Pfam:PF02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain Pfam:PF00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyses the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site [1].	Domain
AA [auth i], C, DA [auth m], F [auth G], GA [auth q], AA [auth i], C, DA [auth m], F [auth G], GA [auth q], I [auth K], JA [auth u], L [auth O], O [auth S], R [auth W], U [auth a], X [auth e]	PF11467	Lens epithelium-derived growth factor (LEDGF) (LEDGF)	Lens epithelium-derived growth factor (LEDGF)	LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alph ...	LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alpha-helices. The residues essential for the interaction with the integrase are present in the inter-helical loop regions of the bundle structure [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	Integrase	catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid RNA exonuclease activity RNA nuclease activity hydrolase activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters nuclease activity hydrolase activity, acting on ester bonds exoribonuclease H activity exonuclease activity catalytic activity catalytic activity, acting on DNA DNA-directed DNA polymerase activity catalytic activity, acting on RNA RNA exonuclease activity, producing 5'-phosphomonoesters catalytic activity, acting on a nucleic acid RNA exonuclease activity RNA nuclease activity hydrolase activity exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters nuclease activity hydrolase activity, acting on ester bonds exoribonuclease H activity exonuclease activity catalytic activity catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity transferase activity nucleotidyltransferase activity transferase activity, transferring phosphorus-containing groups DNA binding binding organic cyclic compound binding nucleic acid binding RNA-directed DNA polymerase activity RNA binding aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein aspartic-type endopeptidase activity endopeptidase activity lipid binding endonuclease activity RNA endonuclease activity, producing 5'-phosphomonoesters RNA-DNA hybrid ribonuclease activity RNA endonuclease activity endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters structural molecule activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	viral genome integration into host DNA viral process viral life cycle viral penetration into host nucleus intracellular transport of virus transport of virus biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process viral genome integration into host DNA viral process viral life cycle viral penetration into host nucleus intracellular transport of virus transport of virus biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host biological process involved in interaction with host biological process involved in symbiotic interaction nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process DNA integration nucleic acid metabolic process establishment of integrated proviral latency viral latency establishment of viral latency DNA recombination symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host gene expression modulation by symbiont of host process symbiont-mediated perturbation of host gene expression cellular process modulation of process of another organism organonitrogen compound metabolic process proteolysis protein metabolic process	membrane cellular anatomical entity host intracellular membrane-bounded organelle host cellular component host intracellular part host multivesicular body host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host cell late endosome host cell endosome host intracellular region viral nucleocapsid membrane cellular anatomical entity host intracellular membrane-bounded organelle host cellular component host intracellular part host multivesicular body host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host cell late endosome host cell endosome host intracellular region viral nucleocapsid viral capsid virion component host cell plasma membrane host cell membrane virion membrane host cell nucleus
AA [auth i], C, DA [auth m], F [auth G], GA [auth q], AA [auth i], C, DA [auth m], F [auth G], GA [auth q], I [auth K], JA [auth u], L [auth O], O [auth S], R [auth W], U [auth a], X [auth e]	PC4 and SFRS1-interacting protein	DNA binding double-stranded DNA binding binding organic cyclic compound binding nucleic acid binding supercoiled DNA binding transcription factor binding protein binding DNA-binding transcription factor binding protein-containing complex binding chromatin binding transcription coactivator activity transcription regulator activity transcription coregulator activity DNA binding double-stranded DNA binding binding organic cyclic compound binding nucleic acid binding supercoiled DNA binding transcription factor binding protein binding DNA-binding transcription factor binding protein-containing complex binding chromatin binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity RNA binding	ribonucleoprotein complex biogenesis cellular biosynthetic process RNA metabolic process mRNA processing protein-RNA complex assembly nucleobase-containing compound metabolic process cellular component organization cellular component biogenesis spliceosomal complex assembly organic substance metabolic process protein-RNA complex organization cellular component assembly organic substance biosynthetic process protein-containing complex assembly ribonucleoprotein complex biogenesis cellular biosynthetic process RNA metabolic process mRNA processing protein-RNA complex assembly nucleobase-containing compound metabolic process cellular component organization cellular component biogenesis spliceosomal complex assembly organic substance metabolic process protein-RNA complex organization cellular component assembly organic substance biosynthetic process protein-containing complex assembly RNA processing cellular component organization or biogenesis mRNA splice site recognition RNA splicing protein-containing complex organization cellular metabolic process primary metabolic process mRNA 5'-splice site recognition gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process RNA splicing, via transesterification reactions mRNA cis splicing, via spliceosome mRNA splicing, via spliceosome metabolic process cellular process RNA splicing, via transesterification reactions with bulged adenosine as nucleophile macromolecule metabolic process response to oxidative stress response to stimulus response to stress response to heat response to abiotic stimulus response to temperature stimulus regulation of cellular process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of transcription by RNA polymerase II regulation of biological process positive regulation of nucleobase-containing compound metabolic process regulation of cellular metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process regulation of gene expression organic cyclic compound biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of cellular metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of biosynthetic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process regulation of cellular biosynthetic process positive regulation of RNA biosynthetic process positive regulation of cellular biosynthetic process protein-DNA complex organization chromatin organization chromatin remodeling	protein-containing complex intracellular anatomical structure protein-DNA complex chromatin chromosome cellular anatomical entity heterochromatin intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle cytoplasm cytosol membrane-bounded organelle protein-containing complex intracellular anatomical structure protein-DNA complex chromatin chromosome cellular anatomical entity heterochromatin intracellular organelle organelle intracellular non-membrane-bounded organelle non-membrane-bounded organelle cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen organelle lumen nuclear periphery nuclear lumen euchromatin nucleoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR001995	Peptidase A2A, retrovirus, catalytic	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR001878	Zinc finger, CCHC-type	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR008919	Retrovirus capsid, N-terminal	Homologous Superfamily
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR012344	Matrix protein, lentiviral and alpha-retroviral, N-terminal	Homologous Superfamily
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR036862	Integrase, C-terminal domain superfamily, retroviral	Homologous Superfamily
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR018061	Retropepsins	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR010661	Reverse transcriptase thumb	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR002156	Ribonuclease H domain	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR036875	Zinc finger, CCHC-type superfamily	Homologous Superfamily
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR003308	Integrase, N-terminal zinc-binding domain	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR001584	Integrase, catalytic core	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR045345	Retroviral nucleocapsid Gag protein p24, C-terminal domain	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR010999	Retroviral matrix protein	Homologous Superfamily
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR001969	Aspartic peptidase, active site	Active Site
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR017856	Integrase-like, N-terminal	Homologous Superfamily
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR000071	Immunodeficiency lentiviral matrix, N-terminal	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR001037	Integrase, C-terminal, retroviral	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR034170	Retropepsin-like catalytic domain	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR000477	Reverse transcriptase domain	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR010659	Reverse transcriptase connection	Domain
A, B, BA [auth k], CA [auth l], D [auth E], A, B, BA [auth k], CA [auth l], D [auth E], E [auth F], EA [auth o], FA [auth p], G [auth I], H [auth J], HA [auth s], IA [auth t], J [auth M], K [auth N], M [auth Q], N [auth R], P [auth U], Q [auth V], S [auth Y], T [auth Z], V [auth c], W [auth d], Y [auth g], Z [auth h]	IPR008916	Retrovirus capsid, C-terminal	Homologous Superfamily
AA [auth i], C, DA [auth m], F [auth G], GA [auth q], AA [auth i], C, DA [auth m], F [auth G], GA [auth q], I [auth K], JA [auth u], L [auth O], O [auth S], R [auth W], U [auth a], X [auth e]	IPR021567	Lens epithelium-derived growth factor, integrase-binding domain	Domain
AA [auth i], C, DA [auth m], F [auth G], GA [auth q], AA [auth i], C, DA [auth m], F [auth G], GA [auth q], I [auth K], JA [auth u], L [auth O], O [auth S], R [auth W], U [auth a], X [auth e]	IPR036218	HIV integrase-binding domain superfamily	Homologous Superfamily
AA [auth i], C, DA [auth m], F [auth G], GA [auth q], AA [auth i], C, DA [auth m], F [auth G], GA [auth q], I [auth K], JA [auth u], L [auth O], O [auth S], R [auth W], U [auth a], X [auth e]	IPR000313	PWWP domain	Domain
AA [auth i], C, DA [auth m], F [auth G], GA [auth q], AA [auth i], C, DA [auth m], F [auth G], GA [auth q], I [auth K], JA [auth u], L [auth O], O [auth S], R [auth W], U [auth a], X [auth e]	IPR035441	TFIIS/LEDGF domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
AA [auth i], C, DA [auth m], F [auth G], GA [auth q], AA [auth i], C, DA [auth m], F [auth G], GA [auth q], I [auth K], JA [auth u], L [auth O], O [auth S], R [auth W], U [auth a], X [auth e]	Pharos: O75475	acute myeloid leukemia psoriasis astrocytic tumor Down syndrome invasive ductal breast carcinoma lung cancer malignant glioma ovarian cancer Sjogren syndrome Acute Myeloid Leukemia (AML-M2) atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma lymphoplasmacytic lymphoma malignant mesothelioma acute myeloid leukemia psoriasis astrocytic tumor Down syndrome invasive ductal breast carcinoma lung cancer malignant glioma ovarian cancer Sjogren syndrome Acute Myeloid Leukemia (AML-M2) atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma lymphoplasmacytic lymphoma malignant mesothelioma progressive supranuclear palsy tuberculosis dermatomyositis hepatocellular carcinoma lung adenocarcinoma malignant ependymoma medulloblastoma