3E3J
Crystal Structure of an Intermediate Complex of T7 RNAP and 8nt of RNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8037503 | 3001272 | SCOP2B (2022-06-29) |
A [auth C] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8037503 | 3001272 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8037503 | 3001272 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | Nucleotide cyclase/DNA polymerase palm domain-like | 8037503 | 3001272 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | PF14700 | e3e3jC6 | A: alpha arrays | X: HTH | H: HTH | T: HTH in T7 RNA polymerase | F: PF14700 | ECOD (1.6) |
A [auth C] | PF00940 | e3e3jC5 | A: alpha arrays | X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I | F: PF00940 | ECOD (1.6) |
A [auth C] | PF00940 | e3e3jC4 | A: alpha arrays | X: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | H: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | T: inserted helical bundle subdomain in T7 RNA polymerase | F: PF00940 | ECOD (1.6) |
A [auth C] | PF14700 | e3e3jC7 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: PF14700 | ECOD (1.6) |
A [auth C] | PF00940 | e3e3jC3 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00940 | ECOD (1.6) |
D [auth B] | PF14700 | e3e3jB5 | A: alpha arrays | X: HTH | H: HTH | T: HTH in T7 RNA polymerase | F: PF14700 | ECOD (1.6) |
D [auth B] | PF00940 | e3e3jB4 | A: alpha arrays | X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I (From Topology) | T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I | F: PF00940 | ECOD (1.6) |
D [auth B] | PF00940 | e3e3jB1 | A: alpha arrays | X: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | H: inserted helical bundle subdomain in T7 RNA polymerase (From Topology) | T: inserted helical bundle subdomain in T7 RNA polymerase | F: PF00940 | ECOD (1.6) |
D [auth B] | PF14700 | e3e3jB6 | A: alpha bundles | X: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | H: fingers domain in bacteriophage RB69-like DNA polymerase I (From Topology) | T: fingers domain in bacteriophage RB69-like DNA polymerase I | F: PF14700 | ECOD (1.6) |
D [auth B] | PF00940 | e3e3jB2 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00940 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], D [auth B] | PF14700 | DNA-directed RNA polymerase N-terminal (RPOL_N) | DNA-directed RNA polymerase N-terminal | This is the N-terminal domain of DNA-directed RNA polymerase. This domain has a role in interaction with regions of upstream promoter DNA and the nascent RNA chain, leading to the processivity of the enzyme [1]. In order to make mRNA transcripts the ... | Domain |
A [auth C], D [auth B] | PF00940 | DNA-dependent RNA polymerase (RNA_pol) | DNA-dependent RNA polymerase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], D [auth B] | IPR029262 | DNA-directed RNA polymerase, N-terminal | Domain |
A [auth C], D [auth B] | IPR002092 | DNA-directed RNA polymerase, phage-type | Family |
A [auth C], D [auth B] | IPR024075 | DNA-directed RNA polymerase, helix hairpin domain superfamily | Homologous Superfamily |
A [auth C], D [auth B] | IPR046950 | DNA-directed RNA polymerase, C-terminal domain, phage-type | Domain |
A [auth C], D [auth B] | IPR043502 | DNA/RNA polymerase superfamily | Homologous Superfamily |
A [auth C], D [auth B] | IPR037159 | DNA-directed RNA polymerase, N-terminal domain superfamily | Homologous Superfamily |