2FCC
Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic Site
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | d2fcca_ | All alpha proteins | T4 endonuclease V | T4 endonuclease V | T4 endonuclease V | T4 endonuclease V | (Tequatrovirus T4 ) [TaxId: 10665 ], | SCOPe (2.08) |
F [auth B] | d2fccb_ | All alpha proteins | T4 endonuclease V | T4 endonuclease V | T4 endonuclease V | T4 endonuclease V | (Tequatrovirus T4 ) [TaxId: 10665 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth A] | SCOP2B Superfamily | T4 endonuclease V | 8036751 | 3001328 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | T4 endonuclease V | 8036751 | 3001328 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | Pyr_excise | e2fccA1 | A: alpha arrays | X: T4 endonuclease V (From Topology) | H: T4 endonuclease V (From Topology) | T: T4 endonuclease V | F: Pyr_excise | ECOD (1.6) |
F [auth B] | Pyr_excise | e2fccB1 | A: alpha arrays | X: T4 endonuclease V (From Topology) | H: T4 endonuclease V (From Topology) | T: T4 endonuclease V | F: Pyr_excise | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
E [auth A] | 1.10.440.10 | Mainly Alpha | Orthogonal Bundle | Endonuclease V | T4 endonuclease V | CATH (4.3.0) |
F [auth B] | 1.10.440.10 | Mainly Alpha | Orthogonal Bundle | Endonuclease V | T4 endonuclease V | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth A], F [auth B] | PF03013 | Pyrimidine dimer DNA glycosylase (Pyr_excise) | Pyrimidine dimer DNA glycosylase | Pyrimidine dimer DNA glycosylases excise pyrimidine dimers by hydrolysis of the glycosylic bond of the 5' pyrimidine, followed by the intra-pyrimidine phosphodiester bond. Pyrimidine dimers are the major UV-lesions of DNA. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
E [auth A], F [auth B] | IPR024796 | T4 endonuclease V | Homologous Superfamily |
E [auth A], F [auth B] | IPR004260 | Pyrimidine dimer DNA glycosylase | Family |
E [auth A], F [auth B] | IPR021143 | Pyrimidine dimer DNA glycosylase, endonuclease V type | Family |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
A [auth C], C [auth E] | PED | AA0494 :  N-(DNA-1',2'-dideoxyribos-1'-ylidene)-L-prolinium MOD:01454 | : 
B [auth D], D [auth F] | BRU | Parent Component: DU :  AA0494 |