1XEZ
Crystal Structure Of The Vibrio Cholerae Cytolysin (HlyA) Pro-Toxin With Octylglucoside Bound
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Leukocidin (pore-forming toxin) | 8091100 | 4003101 | SCOP2 (2022-06-29) |
A | SCOP2 Family | HlyA C-terminal domain-like | 8045628 | 4004576 | SCOP2 (2022-06-29) |
A | SCOP2 Family | HlyA beta-trefoil domain-like | 8091098 | 4007723 | SCOP2 (2022-06-29) |
A | SCOP2 Family | HlyA N-terminal domain-like | 8047657 | 4005743 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Leukocidin-like | 8091101 | 3000256 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Mannose-binding lectins | 8091096 | 3001715 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ricin B-like lectins | 8091099 | 3000678 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | HlyA N-terminal domain-like | 8091097 | 3002488 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07968,PF12563 | e1xezA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Leukocidin-like (From Topology) | T: Leukocidin-like | F: PF07968,PF12563 | ECOD (1.6) |
A | PF00652 | e1xezA4 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: PF00652 | ECOD (1.6) |
A | PF16458 | e1xezA3 | A: beta duplicates or obligate multimers | X: beta-Prism I (From Topology) | H: beta-Prism I (From Topology) | T: beta-Prism I | F: PF16458 | ECOD (1.6) |
A | PF12563 | e1xezA1 | A: a+b two layers | X: Pro-domain of Hemolysin hlyA (From Topology) | H: Pro-domain of Hemolysin hlyA (From Topology) | T: Pro-domain of Hemolysin hlyA | F: PF12563 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.110.130 | Alpha Beta | 2-Layer Sandwich | Translation Initiation Factor IF3 | Hemolytic toxin, N-terminal domain | CATH (4.3.0) |
A | 2.70.240.20 | Mainly Beta | Distorted Sandwich | Leukocidin-like | Leukocidin/Hemolysin toxin, cytolysin domain | CATH (4.3.0) |
A | 6.20.40.20 | Special | Other non-globular | Porin MspA ribbon fold | Leukocidin/Hemolysin toxin, pre-stem domain | CATH (4.3.0) |
A | 2.100.10.30 | Mainly Beta | Aligned Prism | Vitelline Membrane Outer Layer Protein I, subunit A | Jacalin-like lectin domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12563 | Hemolytic toxin N terminal (Hemolysin_N) | Hemolytic toxin N terminal | - | Family | |
PF07968 | Leukocidin/Hemolysin toxin family (Leukocidin) | Leukocidin/Hemolysin toxin family | - | Domain | |
PF16458 | Beta-prism lectin (Beta-prism_lec) | Beta-prism lectin | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
hemolysin |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR043080 | Hemolytic toxin, N-terminal domain superfamily | Homologous Superfamily | |
IPR016183 | Leukocidin/Hemolysin toxin | Domain | |
IPR036435 | Leukocidin/porin MspA superfamily | Homologous Superfamily | |
IPR022220 | Hemolytic toxin, N-terminal | Domain | |
IPR044883 | Hemolysin, pre-stem domain | Homologous Superfamily | |
IPR036404 | Jacalin-like lectin domain superfamily | Homologous Superfamily | |
IPR032496 | Hemolysin, beta-prism lectin | Domain | |
IPR035992 | Ricin B-like lectins | Homologous Superfamily | |
IPR000772 | Ricin B, lectin domain | Domain |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Beta-barrel transmembrane | Pore-forming beta-sheet toxins | HlyA hemolysin (n=14,S=14) |