1VBK
Crystal structure of PH1313 from Pyrococcus horikoshii Ot3
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1vbka1 | Alpha and beta proteins (a/b) | Adenine nucleotide alpha hydrolase-like | Adenine nucleotide alpha hydrolases-like | ThiI-like | Hypothetical protein PH1313, C-terminal domain | (Pyrococcus horikoshii OT3 ) [TaxId: 70601 ], | SCOPe (2.08) |
A | d1vbka2 | Alpha and beta proteins (a+b) | THUMP domain | THUMP domain-like | THUMP domain | Hypothetical protein PH1313, N-terminal domain | (Pyrococcus horikoshii OT3 ) [TaxId: 70601 ], | SCOPe (2.08) |
B | d1vbkb1 | Alpha and beta proteins (a/b) | Adenine nucleotide alpha hydrolase-like | Adenine nucleotide alpha hydrolases-like | ThiI-like | Hypothetical protein PH1313, C-terminal domain | (Pyrococcus horikoshii OT3 ) [TaxId: 70601 ], | SCOPe (2.08) |
B | d1vbkb2 | Alpha and beta proteins (a+b) | THUMP domain | THUMP domain-like | THUMP domain | Hypothetical protein PH1313, N-terminal domain | (Pyrococcus horikoshii OT3 ) [TaxId: 70601 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | THUMP domain | 8020745 | 4003734 | SCOP2 (2022-06-29) |
A | SCOP2 Family | ThiI-like | 8020744 | 4002568 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | THUMP domain-like | 8033125 | 3001379 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Adenine nucleotide alpha hydrolases-like | 8033124 | 3001593 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Adenine nucleotide alpha hydrolases-like | 8033124 | 3001593 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | THUMP domain-like | 8033125 | 3001379 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF22025 | e1vbkA1 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin-like domain in ThiI (From Topology) | T: Ferredoxin-like domain in ThiI | F: PF22025 | ECOD (1.6) |
A | PF02926 | e1vbkA2 | A: a+b two layers | X: THUMP domain-like (From Topology) | H: THUMP domain-like (From Topology) | T: THUMP domain-like | F: PF02926 | ECOD (1.6) |
A | PF02568 | e1vbkA3 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: PF02568 | ECOD (1.6) |
B | PF22025 | e1vbkB1 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin-like domain in ThiI (From Topology) | T: Ferredoxin-like domain in ThiI | F: PF22025 | ECOD (1.6) |
B | PF02926 | e1vbkB2 | A: a+b two layers | X: THUMP domain-like (From Topology) | H: THUMP domain-like (From Topology) | T: THUMP domain-like | F: PF02926 | ECOD (1.6) |
B | PF02568 | e1vbkB3 | A: a/b three-layered sandwiches | X: HUP domain-like | H: HUP domains (From Topology) | T: HUP domains | F: PF02568 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.1510 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | THUMP domain-like | CATH (4.3.0) |
A | 3.30.2300.10 | Alpha Beta | 2-Layer Sandwich | THUMP fold | THUMP superfamily | CATH (4.3.0) |
A | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
B | 3.30.70.1510 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | THUMP domain-like | CATH (4.3.0) |
B | 3.30.2300.10 | Alpha Beta | 2-Layer Sandwich | THUMP fold | THUMP superfamily | CATH (4.3.0) |
B | 3.40.50.620 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | HUPs | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02926 | THUMP domain (THUMP) | THUMP domain | The THUMP domain is named after after thiouridine synthases, methylases and PSUSs [1]. The THUMP domain consists of about 110 amino acid residues. This domain is found in many tRNA modification enzymes classified into five types, namely 4-thiouridine ... | Domain | |
PF02568 | Thiamine biosynthesis protein (ThiI) (ThiI) | Thiamine biosynthesis protein (ThiI) | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR020536 | Thil, AANH domain | Domain | |
IPR004114 | THUMP domain | Domain | |
IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold | Homologous Superfamily |