1SLQ
Crystal structure of the trimeric state of the rhesus rotavirus VP4 membrane interaction domain, VP5CT
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | VP4 membrane interaction domain-like | 8027184 | 4003013 | SCOP2 (2022-06-29) |
A | SCOP2 Family | VP4 trimerisation region-like | 8055447 | 4007643 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | VP4 membrane interaction domain | 8039563 | 3002014 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | VP4 trimerisation region-like | 8055448 | 3002293 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | VP4 membrane interaction domain | 8039563 | 3002014 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | VP4 trimerisation region-like | 8055448 | 3002293 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | VP4 membrane interaction domain | 8039563 | 3002014 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | VP4 trimerisation region-like | 8055448 | 3002293 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | VP4 membrane interaction domain | 8039563 | 3002014 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | VP4 trimerisation region-like | 8055448 | 3002293 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | VP4 membrane interaction domain | 8039563 | 3002014 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | VP4 membrane interaction domain | 8039563 | 3002014 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF17477 | e1slqA2 | A: beta sandwiches | X: VP4 membrane interaction domain (From Topology) | H: VP4 membrane interaction domain (From Topology) | T: VP4 membrane interaction domain | F: PF17477 | ECOD (1.6) |
B | PF17477 | e1slqB1 | A: beta sandwiches | X: VP4 membrane interaction domain (From Topology) | H: VP4 membrane interaction domain (From Topology) | T: VP4 membrane interaction domain | F: PF17477 | ECOD (1.6) |
C | PF17477 | e1slqC1 | A: beta sandwiches | X: VP4 membrane interaction domain (From Topology) | H: VP4 membrane interaction domain (From Topology) | T: VP4 membrane interaction domain | F: PF17477 | ECOD (1.6) |
D | PF17477 | e1slqD1 | A: beta sandwiches | X: VP4 membrane interaction domain (From Topology) | H: VP4 membrane interaction domain (From Topology) | T: VP4 membrane interaction domain | F: PF17477 | ECOD (1.6) |
E | PF17477 | e1slqE1 | A: beta sandwiches | X: VP4 membrane interaction domain (From Topology) | H: VP4 membrane interaction domain (From Topology) | T: VP4 membrane interaction domain | F: PF17477 | ECOD (1.6) |
F | PF17477 | e1slqF1 | A: beta sandwiches | X: VP4 membrane interaction domain (From Topology) | H: VP4 membrane interaction domain (From Topology) | T: VP4 membrane interaction domain | F: PF17477 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.5.170 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
B | 1.20.5.170 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
C | 1.20.5.170 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
D | 1.20.5.170 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
E | 1.20.5.170 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
F | 1.20.5.170 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17477 | Rotavirus VP4 membrane interaction domain (Rota_VP4_MID) | Rotavirus VP4 membrane interaction domain | This entry represents the VP4 membrane interaction domain. | Domain | |
PF17478 | Rotavirus VP4 helical domain (VP4_helical) | Rotavirus VP4 helical domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000416 | Haemagglutinin outer capsid protein VP4, concanavalin-like domain | Domain | |
IPR035330 | Rotavirus VP4, membrane interaction domain | Domain | |
IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily | |
IPR035329 | Rotavirus VP4 helical domain | Domain | |
IPR042546 | Outer capsid protein VP4 | Family | |
IPR038017 | Rotavirus VP4, membrane interaction domain superfamily | Homologous Superfamily |