1BDX
E. COLI DNA HELICASE RUVA WITH BOUND DNA HOLLIDAY JUNCTION, ALPHA CARBONS AND PHOSPHATE ATOMS ONLY
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E [auth A] | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8037705 | 3000163 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8041920 | 3000135 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | DNA helicase RuvA subunit C-terminal domain | 8036671 | 3001225 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | DNA helicase RuvA subunit C-terminal domain | 8036671 | 3001225 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8041920 | 3000135 | SCOP2B (2022-06-29) |
F [auth B] | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8037705 | 3000163 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8041920 | 3000135 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | DNA helicase RuvA subunit C-terminal domain | 8036671 | 3001225 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8037705 | 3000163 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8041920 | 3000135 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | DNA helicase RuvA subunit C-terminal domain | 8036671 | 3001225 | SCOP2B (2022-06-29) |
H [auth D] | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8037705 | 3000163 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth A] | PF01330 | e1bdxA1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01330 | ECOD (1.6) |
E [auth A] | PF14520 | e1bdxA2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF14520 | ECOD (1.6) |
E [auth A] | PF07499 | e1bdxA3 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: PF07499 | ECOD (1.6) |
F [auth B] | PF01330 | e1bdxB1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01330 | ECOD (1.6) |
F [auth B] | PF14520 | e1bdxB2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF14520 | ECOD (1.6) |
F [auth B] | PF07499 | e1bdxB3 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: PF07499 | ECOD (1.6) |
G [auth C] | PF01330 | e1bdxC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01330 | ECOD (1.6) |
G [auth C] | PF14520 | e1bdxC2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF14520 | ECOD (1.6) |
G [auth C] | PF07499 | e1bdxC3 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: PF07499 | ECOD (1.6) |
H [auth D] | PF01330 | e1bdxD1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01330 | ECOD (1.6) |
H [auth D] | PF14520 | e1bdxD2 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF14520 | ECOD (1.6) |
H [auth D] | PF07499 | e1bdxD3 | A: alpha arrays | X: RuvA-C | H: RuvA-C, UBA, CRAL/TRIO-N, HBS1 (From Topology) | T: RuvA-C, UBA, CRAL/TRIO-N, HBS1 | F: PF07499 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth A], F [auth B], G [auth C], H [auth D] | PF07499 | RuvA, C-terminal domain (RuvA_C) | RuvA, C-terminal domain | Homologous recombination is a crucial process in all living organisms. In bacteria, this process the RuvA, RuvB, and RuvC proteins are involved. More specifically the proteins process the Holliday junction DNA. RuvA is comprised of three distinct d ... | Domain |
E [auth A], F [auth B], G [auth C], H [auth D] | PF01330 | RuvA N terminal domain (RuvA_N) | RuvA N terminal domain | The N terminal domain of RuvA has an OB-fold structure. This domain forms the RuvA tetramer contacts [1]. | Domain |
E [auth A], F [auth B], G [auth C], H [auth D] | PF14520 | Helix-hairpin-helix domain (HHH_5) | Helix-hairpin-helix domain | - | Domain |