Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyMethylglyoxal synthase MgsA8031795 4003765 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyMethylglyoxal synthase-like8044173 3001443 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyMethylglyoxal synthase-like8044173 3001443 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMethylglyoxal synthase-like8044173 3001443 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AMGSe1b93A1 A: a/b three-layered sandwichesX: Methylglyoxal synthase-like (From Topology)H: Methylglyoxal synthase-like (From Topology)T: Methylglyoxal synthase-likeF: MGSECOD (1.6)
BMGSe1b93B1 A: a/b three-layered sandwichesX: Methylglyoxal synthase-like (From Topology)H: Methylglyoxal synthase-like (From Topology)T: Methylglyoxal synthase-likeF: MGSECOD (1.6)
CMGSe1b93C1 A: a/b three-layered sandwichesX: Methylglyoxal synthase-like (From Topology)H: Methylglyoxal synthase-like (From Topology)T: Methylglyoxal synthase-likeF: MGSECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.1380 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Methylglyoxal synthase-like domainCATH (4.3.0)
B3.40.50.1380 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Methylglyoxal synthase-like domainCATH (4.3.0)
C3.40.50.1380 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Methylglyoxal synthase-like domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF02142MGS-like domain (MGS)MGS-like domainThis domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes ino ...This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
A, C
methylglyoxal synthase  M-CSA #85

Methylglyoxyl synthase catalyses the first reaction in the methylglyoxyl bypass of the Embden-Myerhoff pathway (glycolysis), the conversion of dihydroxyacetone phosphate into methylglyoxal and orthophosphate. The physiological benefits of this are yet to be understood as the final product of methylglyoxal synthase is cytotoxic in small quantities and has been shown to be mutagenic and to interfere with de novo protein and nucleic acid synthesis. The intermediate, D-lactoylglutathione is also toxic in millimolar quantities, interfering with intermediate filament synthesis. The methylglyoxyl bypass system is inhibited allosterically by phosphate suggesting that is only functions in times of phosphate deprivation although more recent data imply that it may facilitate the transition between conditions of high and low phosphate. There is much interest in this enzyme for two reasons: firstly it has been implicated in diabetic complications and secondly due to its ability to metabolise anti-cancer drugs rendering treatments ineffective.

Defined by 7 residues: HIS:A-19GLY:A-66ASP:A-71ASP:A-91HIS:A-98ASP:A-101ARG:C-107
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